Environmental factors influence the detection probability in acoustic telemetry in a marine environment : results from a new setup

Acoustic telemetry is a commonly applied method to investigate the ecology of marine animals and provides a scientific basis for management and conservation. Crucial insight in animal behaviour and ecosystem functioning and dynamics is gained through acoustic receiver networks that are established in many different environments around the globe. The main limitation to this technique is the ability of the receivers to detect the signals from tagged animals present in the nearby area. To interpret acoustic data correctly, understanding influencing factors on the detection probability is critical. Therefore, range test studies are an essential part of acoustic telemetry research. Here, we investigated whether specific environmental factors (i.e. wind, currents, waves, background noise, receiver tilt and azimuth) influence the receiver detection probability for a permanent acoustic receiver network in Belgium. Noise and wind speed in relation to distance, the interaction of receiver tilt and azimuth and current speed were the most influential variables affecting the detection probability in this environment. The study indicated that there is high detection probability up to a distance of circa 200 m. A new setup, making use of features that render valuable information for data analysis and interpretation, was tested and revealed general applicability

Evidence-based management of the Anzali wetland system (Northern Iran) based on innovative monitoring and modeling methods

As an “international aquatic ecosystem” in Northern Iran, the Anzali wetland is a nursery for fish and a breeding and wintering area for a wide variety of waterfowl. The wetland is threatened by human activities (deforestation, hunting, tourism, and urbanization), leading to habitat destruction, eutrophication, and sediment accumulation. To stop the degradation and to set up effective protection and restoration in line with the Sustainable Development Goals, scientific insights must be integrated into a practical framework for evidence-based support for policymakers and managers of the Anzali wetland. In this study, the Drivers–Pressure–State–Impact–Response (DPSIR) framework is used as a suitable tool to link human pressures and state changes to derive an overview of the potential impacts. Population growth, intensive agriculture, increased urbanization, and industrialization are the major driving forces that have led to a complex cascade of state changes. For instance, during recent years, water quality deterioration, habitat degradation, and the overgrowth of invasive species in the Anzali wetland watershed have caused negative socio-economic and human health impacts. Integrated and innovative monitoring programs combined with socio-environmental modeling techniques are needed for a more evidence-based management approach as part of a multiresponse strategy for the sustainable development of the wetland system. In this respect, there is a critical gap in useful information concerning biological composition and innovative monitoring methods. Moreover, the relation of biota with human activity and environmental conditions needs to be better quantified. Therefore, ecological modeling techniques based on machine learning and statistics were reviewed for their advantages and disadvantages. The overview of approaches presented here can serve as the basis for scientists, practitioners, and decision-makers to develop and implement evidence-based management programs for the Anzali wetland

Shifts in the suitable habitat available for brown trout (Salmo trutta L.) under short-term climate change scenarios

The impact of climate change on the habitat suitability for large brown trout (Salmo trutta L.) was studied in a segment of the Cabriel River (Iberian Peninsula). The future flow and water temperature patterns were simulated at a daily time step with M5 models' trees (NSE of 0.78 and 0.97 respectively) for two short-term scenarios (2011 2040) under the representative concentration pathways (RCP 4.5 and 8.5). An ensemble of five strongly regularized machine learning techniques (generalized additive models, multilayer perceptron ensembles, random forests, support vector machines and fuzzy rule base systems) was used to model the microhabitat suitability (depth, velocity and substrate) during summertime and to evaluate several flows simulated with River2D©. The simulated flow rate and water temperature were combined with the microhabitat assessment to infer bivariate habitat duration curves (BHDCs) under historical conditions and climate change scenarios using either the weighted usable area (WUA) or the Boolean-based suitable area (SA). The forecasts for both scenarios jointly predicted a significant reduction in the flow rate and an increase in water temperature (mean rate of change of ca. −25% and +4% respectively). The five techniques converged on the modelled suitability and habitat preferences; large brown trout selected relatively high flow velocity, large depth and coarse substrate. However, the model developed with support vector machines presented a significantly trimmed output range (max.: 0.38), and thus its predictions were banned from the WUA-based analyses. The BHDCs based on the WUA and the SA broadly matched, indicating an increase in the number of days with less suitable habitat available (WUA and SA) and/or with higher water temperature (trout will endure impoverished environmental conditions ca. 82% of the days). Finally, our results suggested the potential extirpation of the species from the study site during short time spans.The study has been partially funded by the IMPADAPT project (CGL2013-48424-C2-1-R) - Spanish MINECO (Ministerio de Economia y Competitividad) - and FEDER funds and by the Confederacion Hidrografica del Jucar (Spanish Ministry of Agriculture, Food and Environment). We are grateful to the colleagues who worked in the field and in the preliminary data analyses, especially Juan Diego Alcaraz-Henandez, David Argibay, Aina Hernandez and Marta Bargay. Thanks to Matthew J. Cashman for the academic review of English. Finally, the authors would also to thank the Direccion General del Agua and INFRAECO for the cession of the trout data. The authors thank AEMET and UC by the data provided for this work (dataset Spain02).Muñoz Mas, R.; López Nicolás, AF.; Martinez-Capel, F.; Pulido-Velazquez, M. (2016). Shifts in the suitable habitat available for brown trout (Salmo trutta L.) under short-term climate change scenarios. Science of the Total Environment. 544:686-700. https://doi.org/10.1016/j.scitotenv.2015.11.14768670054

Epidemiology and control strategies applied to ash dieback and chestnut ink disease

Main goal of forest diseases’ management is to reduce economic, biological and aesthetic damages and biodiversity loss caused by plant parasites. The many strategies used can be grouped under two main actions, prevention (prophylaxis in some early writings) and therapy (treatment or cure). Prevention is limited primarily by the lack of knowledge of the organisms involved, including host plants. Mathematical models have been used to extend the understanding of plant disease epidemiology on a number of fronts, providing an opportunity for a more rational use of resources on expensive field trials and representing a step towards more sustainable control measures. From a curative point of view, current efforts by scientists have focused on developing diseases management (Pest Management = PM) concepts in order to balance the benefits of pesticides with the ecological concerns of their residues contaminating the environment. In this thesis, the two PM principles were applied from an innovative point of view on two case studies: ash dieback caused by Hymenoscyphus fraxineus, which can be considered the most serious disease for Fraxinus genus in Europe, and chestnut ink disease, caused by Phytophthora cambivora and P. cinnamomi. In the first part of the thesis, the two diseases are introduced, in order to permit the evaluation of similarities and differences (chapter I). Subsequently, from chapter II to chapter V, the experimental trials performed are described. In particular, in chapter II a study of the ecological niche of H. fraxineus, with the characterization of the environmental variables associated with naturally infected zones, is reported. This procedure was realized with Species Distribution Models (SDM), widely utilized in the ecological field and only recently applied to plant pathology. The presence of the pathogen was highly correlated to three summer predictors: abundant precipitation, high soil moisture and low air temperature, in comparison with the averages of the study area. The ensemble forecasting technique was then applied to obtain a prediction of the potential distribution of the pathogen at European scale, considering the distribution maps of Fraxinus excelsior and Fraxinus angustifolia, susceptible to the parasite. At last, an innovative method of network analysis permitted to identify the suitable areas that are not reachable by the pathogen with a natural spread. Chapter III reports a study conducted to evaluate six fungicides for their potential to control ash dieback. Initially, in vitro tests of the active ingredients against five different strains of the pathogen indicated thiabendazole, propiconazole and allicin as the most effective fungicides, with lower median lethal doses than procloraz. In contrast, copper sulphate and potassium phosphite were totally ineffective. Subsequently, the antifungal activities of the best three compounds were investigated in planta against H. fraxineus by trunk injection on European ashes inoculated with an indigenous strain. The test was preceded by preliminary trials to maximize the efficacy of injections; in the experimental conditions highest speed was reached with the addition of 1.2 % acetic acid to the aqueous solution and making treatments in early morning or late afternoon. Considering the results of in planta trial, thiabendazole and allicin significantly slowed down the growth of the necroses in the growing season, in contrast propiconazole injections were impracticable. The studies in chapters IV and V recall the methodologies applied to ash dieback, with application to chestnut ink disease complex. In particular, in chapter IV fuzzy logic theory was applied considering the environmental variables, such as minimum winter temperature, summer drought, slope's aspect, streams' distance and soil's permeability, that mainly can influence the development of the disease. The model was validated with a broad field survey conducted in a chestnut area in Treviso province. Moreover, uncertainty maps (regarding model structure, inputs and parameters) were produced for the correct interpretation of the prediction. Great part of the chestnut area in the study zone resulted as suitable for the development of ink disease, whereas only the 18.8 %, corresponding to higher elevation zones, presented inferior risks. In a second study (chapter V), a comparative efficacy trial on four potassium phosphite formulations by means of endotherapy against chestnut ink disease is performed. P. cinnamomi was isolated with baiting technique from symptomatic chestnuts and was inoculated on 50 asymptomatic trees. As a result of endotherapic treatments, the unique solution that significantly slowed down necroses' growth was potassium phosphite (35 %) with an addition of 0.1 % micronutrient solution. An additional endotherapic trial was conducted in a preliminary way in the chestnut where P. cinnamomi was isolated, with the main aim to evaluate growth stimulation of active growing callus next to the shape flame necroses by the injected solution of potassium phosphite 70 %. In this case, results did not highlight a significant difference between treated trees and water control ones, probably for the need of longer times for older trees. On the base of the achieved results, epidemiological modelling and endotherapic treatments, applied both to ash dieback and chestnut ink disease, can represent fundamental tools in the management of these important diseases and should be applied in an Integrated Pest Management (IPM) approach, together with appropriate cultural techniques to maximize benefits

Estado de las poblaciones de trucha en los ríos de la Comunidad Valenciana y caracterización de sus hábitats

Los estudios acerca de la ecología de los peces tienen como una de sus principales bases la evaluación de las poblaciones, encaminados a definir el conjunto de los individuos de una misma especie que vive en un espacio común. Por lo tanto, el análisis del hábitat es clave para la estructura de las poblaciones. Desde el punto de vista de la teoría jerárquica ecológica, los patrones biológicos que gobiernan a las poblaciones de peces de los ríos son controlados y ajustados por los patrones físicos del hábitat. Así pues, una descripción exacta de los ríos es un primer paso en la descripción de los requerimientos ecológicos de los organismos durante su vida así como en los procesos que influyen en su abundancia y distribución. En este sentido, esta tesis aporta un mayor conocimiento de las poblaciones de trucha común (Salmo trutta) y de sus hábitats en ríos mediterráneos. El estudio se llevó a cabo en cuatro ríos de la Comunidad Valenciana (España) donde hoy en día la especie habita de forma natural; Ebrón y Vallanca (en la provincia de Valencia), Villahermosa y Palancia (en la provincia de Castellón). Los muestreos se realizaron entre los meses de Junio y Agosto entre los años 2003 y 2006. El primer año se establecieron dos estaciones de muestreo en cada río. En los restantes años se amplió a cuatro estaciones de muestreo en cada río. Se destaca el hecho de que en los dos últimos años de estudio (2005 y 2006) hubo una fuerte sequía que hizo que los tramos más altos de los ríos Vallanca y Villahermosa se secaran, perdiéndose tres de las dieciséis estaciones establecidas. En total se muestrearon 50 tramos en los cuatro años de muestreo. Para la caracterización del hábitat se adaptó el protocolo de muestreo "Basinwide Visual Estimation Technique - BVET". Esta técnica consiste en estratificar visualmente el cauce según sus diferentes biotopos (unidades hidromorfológicas o mesohábitats), registrándose en ellos las distintas características hidromorfológicas.Alcaraz Hernández, JD. (2011). Estado de las poblaciones de trucha en los ríos de la Comunidad Valenciana y caracterización de sus hábitats [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/14271Palanci