NASA Center for Climate Simulation (NCCS) Advanced Technology AT5 Virtualized Infiniband Report

The NCCS is part of the Computational and Information Sciences and Technology Office (CISTO) of Goddard Space Flight Center's (GSFC) Sciences and Exploration Directorate. The NCCS's mission is to enable scientists to increase their understanding of the Earth, the solar system, and the universe by supplying state-of-the-art high performance computing (HPC) solutions. To accomplish this mission, the NCCS (https://www.nccs.nasa.gov) provides high performance compute engines, mass storage, and network solutions to meet the specialized needs of the Earth and space science user communitie

Enhancing HPC on Virtual Systems in Clouds through Optimizing Virtual Overlay Networks

Virtual Ethernet overlay provides a powerful model for realizing virtual distributed and parallel computing systems with strong isolation, portability, and recoverability properties. However, in extremely high throughput and low latency networks, such overlays can suffer from bandwidth and latency limitations, which is of particular concern in HPC environments. Through a careful and quantitative analysis, I iden- tify three core issues limiting performance: delayed and excessive virtual interrupt delivery into guests, copies between host and guest data buffers during encapsulation, and the semantic gap between virtual Ethernet features and underlying physical network features. I propose three novel optimizations in response: optimistic timer- free virtual interrupt injection, zero-copy cut-through data forwarding, and virtual TCP offload. These optimizations improve the latency and bandwidth of the overlay network on 10 Gbps Ethernet and InfiniBand interconnects, resulting in near-native performance for a wide range of microbenchmarks and MPI application benchmarks

Single system image: A survey

Single system image is a computing paradigm where a number of distributed computing resources are aggregated and presented via an interface that maintains the illusion of interaction with a single system. This approach encompasses decades of research using a broad variety of techniques at varying levels of abstraction, from custom hardware and distributed hypervisors to specialized operating system kernels and user-level tools. Existing classification schemes for SSI technologies are reviewed, and an updated classification scheme is proposed. A survey of implementation techniques is provided along with relevant examples. Notable deployments are examined and insights gained from hands-on experience are summarized. Issues affecting the adoption of kernel-level SSI are identified and discussed in the context of technology adoption literature

Acceleration of the hardware-software interface of a communication device for parallel systems

During the last decades the ever growing need for computational power fostered the development of parallel computer architectures. Applications need to be parallelized and optimized to be able to exploit modern system architectures. Today, scalability of applications is more and more limited both by development resources, as programming of complex parallel applications becomes increasingly demanding, and by the fundamental scalability issues introduced by the cost of communication in distributed memory systems. Lowering the latency of communication is mandatory to increase scalability and serves as an enabling technology for programming of distributed memory systems at a higher abstraction layer using higher degrees of compiler driven automation. At the same time it can increase performance of such systems in general. In this work, the software/hardware interface and the network interface controller functions of the EXTOLL network architecture, which is specifically designed to satisfy the needs of low-latency networking for high-performance computing, is presented. Several new architectural contributions are made in this thesis, namely a new efficient method for virtual-tophysical address-translation named ATU and a novel method to issue operations to a virtual device in an optimal way which has been termed Transactional I/O. This new method needs changes in the architecture of the host CPU the device is connected to. Two additional methods that emulate most of the characteristics of Transactional I/O are developed and employed in the development of the EXTOLL hardware to facilitate usage together with contemporary CPUs. These new methods heavily leverage properties of the HyperTransport interface used to connect the device to the CPU. Finally, this thesis also introduces an optimized remote-memory-access architecture for efficient split-phase transactions and atomic operations. The complete architecture has been prototyped using FPGA technology enabling a more precise analysis and verification than is possible using simulation alone. The resulting design utilizes 95 % of a 90 nm FPGA device and reaches speeds of 200 MHz and 156 MHz in the different clock domains of the design. The EXTOLL software stack is developed and a performance evaluation of the software using the EXTOLL hardware is performed. The performance evaluation shows an excellent start-up latency value of 1.3 μs, which competes with the most advanced networks available, in spite of the technological performance handicap encountered by FPGA technology. The resulting network is, to the best of the knowledge of the author, the fastest FPGA-based interconnection network for commodity processors ever built

EbbRT: a framework for building per-application library operating systems

Efficient use of high speed hardware requires operating system components be customized to the application work- load. Our general purpose operating systems are ill-suited for this task. We present EbbRT, a framework for constructing per-application library operating systems for cloud applications. The primary objective of EbbRT is to enable high-performance in a tractable and maintainable fashion. This paper describes the design and implementation of EbbRT, and evaluates its ability to improve the performance of common cloud applications. The evaluation of the EbbRT prototype demonstrates memcached, run within a VM, can outperform memcached run on an unvirtualized Linux. The prototype evaluation also demonstrates an 14% performance improvement of a V8 JavaScript engine benchmark, and a node.js webserver that achieves a 50% reduction in 99th percentile latency compared to it run on Linux

Optics and virtualization as data center network infrastructure

The emerging cloud services have motivated a fresh look at the design of data center network infrastructure in multiple layers. To transfer the huge amount of data generated by many data intensive applications, data center network has to be fast, scalable and power efficient. To support flexible and efficient sharing in cloud services, service providers deploy a virtualization layer as part of the data center infrastructure. This thesis explores the design and performance analysis of data center network infrastructure in both physical network and virtualization layer. On the physical network design front, we present a hybrid packet/circuit switched network architecture which uses circuit switched optics to augment traditional packet-switched Ethernet in modern data centers. We show that this technique has substantial potential to improve bisection bandwidth and application performance in a cost-effective manner. To push the adoption of optical circuits in real cloud data centers, we further explore and address the circuit control issues in shared data center environments. On the virtualization layer, we present an analytical study on the network performance of virtualized data centers. Using Amazon EC2 as an experiment platform, we quantify the impact of virtualization on network performance in commercial cloud. Our findings provide valuable insights to both cloud users in moving legacy application into cloud and service providers in improving the virtualization infrastructure to support better cloud services

Revisiting Actor Programming in C++

The actor model of computation has gained significant popularity over the last decade. Its high level of abstraction makes it appealing for concurrent applications in parallel and distributed systems. However, designing a real-world actor framework that subsumes full scalability, strong reliability, and high resource efficiency requires many conceptual and algorithmic additives to the original model. In this paper, we report on designing and building CAF, the "C++ Actor Framework". CAF targets at providing a concurrent and distributed native environment for scaling up to very large, high-performance applications, and equally well down to small constrained systems. We present the key specifications and design concepts---in particular a message-transparent architecture, type-safe message interfaces, and pattern matching facilities---that make native actors a viable approach for many robust, elastic, and highly distributed developments. We demonstrate the feasibility of CAF in three scenarios: first for elastic, upscaling environments, second for including heterogeneous hardware like GPGPUs, and third for distributed runtime systems. Extensive performance evaluations indicate ideal runtime behaviour for up to 64 cores at very low memory footprint, or in the presence of GPUs. In these tests, CAF continuously outperforms the competing actor environments Erlang, Charm++, SalsaLite, Scala, ActorFoundry, and even the OpenMPI.Comment: 33 page

A Personal Virtual Computer Recorder

Continuing advances in hardware technology have enabled the proliferation of faster, cheaper, and more capable personal computers. Users of all backgrounds rely on their computers to handle ever-expanding information, communication, and computation needs. As users spend more time interacting with their computers, it is becoming increasingly important to archive and later search the knowledge, ideas and information that they have viewed through their computers. However, existing state-of-the-art web and desktop search tools fail to provide a suitable solution, as they focus on static, accessible documents in isolation. Thus, finding the information one has viewed among the ever-increasing and chaotic sea of data available from a computer remains a challenge. This dissertation introduces DejaView, a personal virtual computer recorder that enhances personal computers with the ability to process display-centric content to help users with all the information they see through their computers. DejaView continuously records a user's session to provide a complete WYSIWYS (What You Search Is What You've Seen) record of a desktop computing experience, enabling users to playback, browse, search, and revive records, making it easier to retrieve and interact with information they have seen before. DejaView records visual output, checkpoints corresponding application and file system states, and captures onscreen text with contextual information to index the record. A user can then browse and search the record for any visual information that has been previously displayed on the desktop, and revive and interact with the desktop computing state corresponding to any point in the record. DejaView introduces new, transparent operating system, display and file system virtualization techniques and novel semantic display-centric information recording, and combines them to provide its functionality without any modifications to applications, window systems, or operating system kernels. Our results demonstrate that DejaView can provide continuous low-overhead recording without any user-noticeable performance degradation, and allows users to playback, browse, search, and time-travel back to records fast enough for interactive use. This dissertation also demonstrates how DejaView's execution virtualization and recording extend beyond the desktop recorder context. We introduce a coordinated, parallel checkpoint-restart mechanism for distributed applications that minimizes synchronization overhead and uniquely supports complete checkpoint and restart of network state in a transport protocol independent manner, for both reliable and unreliable protocols. We introduce a scalable system that enables significant energy saving by migrating network state and applications off of idle hosts allowing the hosts to enter low-power suspend state, while preserving their network presence. Finally, we show how our techniques can be integrated into a commodity operating system, mainline Linux, thereby allowing the entire operating systems community to benefit from mature checkpoint-restart that is transparent, secure, reliable, efficient, and integral to the Linux kernel

CUsched: multiprogrammed workload scheduling on GPU architectures

Graphic Processing Units (GPUs) are currently widely used in High Performance Computing (HPC) applications to speed-up the execution of massively-parallel codes. GPUs are well-suited for such HPC environments because applications share a common characteristic with the gaming codes GPUs were designed for: only one application is using the GPU at the same time. Although, minimal support for multi-programmed systems exist, modern GPUs do not allow resource sharing among different processes. This lack of support restricts the usage of GPUs in desktop and mobile environment to a small amount of applications (e.g., games and multimedia players). In this paper we study the multi-programming support available in current GPUs, and show how such support is not sufficient. We propose a set of hardware extensions to the current GPU architectures to efficiently support multi-programmed GPU workloads, allowing concurrent execution of codes from different user processes. We implement several hardware schedulers on top of these extensions and analyze the behaviour of different work scheduling algorithms using system wide and per process metrics.Postprint (published version

Effects of Communication Protocol Stack Offload on Parallel Performance in Clusters

The primary research objective of this dissertation is to demonstrate that the effects of communication protocol stack offload (CPSO) on application execution time can be attributed to the following two complementary sources. First, the application-specific computation may be executed concurrently with the asynchronous communication performed by the communication protocol stack offload engine. Second, the protocol stack processing can be accelerated or decelerated by the offload engine. These two types of performance effects can be quantified with the use of the degree of overlapping Do and degree of acceleration Daccs. The composite communication speedup metrics S_comm(Do, Daccs) can be used in order to quantify the combined effects of the protocol stack offload. This dissertation thesis is validated empirically. The degree of overlapping Do, the degree of acceleration Daccs, and the communication speedup Scomm characteristic of the system configurations under test are derived in the course of experiments performed for the system configurations of interest. It is shown that the proposed metrics adequately describe the effects of the protocol stack offload on the application execution time. Additionally, a set of analytical models of the networking subsystem of a PC-based cluster node is developed. As a result of the modeling, the metrics Do, Daccs, and Scomm are obtained. The models are evaluated as to their complexity and precision by comparing the modeling results with the measured values of Do, Daccs, and Scomm. The primary contributions of this dissertation research are as follows. First, the metric Daccs and Scomm are introduced in order to complement the Do metric in its use for evaluation of the effects of optimizations in the networking subsystem on parallel performance in clusters. The metrics are shown to adequately describe CPSO performance effects. Second, a method for assessing performance effects of CPSO scenarios on application performance is developed and presented. Third, a set of analytical models of cluster node networking subsystems with CPSO capability is developed and characterised as to their complexity and precision of the prediction of the Do and Daccs metrics