Etiology-based classification of brain white matter hyperintensity on magnetic resonance imaging

Brain white matter lesions found upon magnetic resonance imaging are often observed in psychiatric or neurological patients. Individuals with these lesions present a more significant cognitive impairment when compared with individuals without them. We propose a computerized method to distinguish tissue containing white matter lesions of different etiologies (e.g., demyelinating or ischemic) using texture-based classifiers. Texture attributes were extracted from manually selected regions of interest and used to train and test supervised classifiers. Experiments were conducted to evaluate texture attribute discrimination and classifiers' performances. The most discriminating texture attributes were obtained from the gray-level histogram and from the co-occurrence matrix. The best classifier was the support vector machine, which achieved an accuracy of 87.9% in distinguishing lesions with different etiologies and an accuracy of 99.29% in distinguishing normal white matter from white matter lesions. (c) 2015 Society of Photo-Optical Instrumentation Engineers (SPIE)21COORDENAÇÃO DE APERFEIÇOAMENTO DE PESSOAL DE NÍVEL SUPERIOR - CAPESFUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO - FAPESPnão tem2012/21826-1; 2013/07559-

Computational Intelligence Methods for Medical Image Understanding, Visualization, and Interaction

Ph.DDOCTOR OF PHILOSOPH

Histopathological image analysis : a review

Over the past decade, dramatic increases in computational power and improvement in image analysis algorithms have allowed the development of powerful computer-assisted analytical approaches to radiological data. With the recent advent of whole slide digital scanners, tissue histopathology slides can now be digitized and stored in digital image form. Consequently, digitized tissue histopathology has now become amenable to the application of computerized image analysis and machine learning techniques. Analogous to the role of computer-assisted diagnosis (CAD) algorithms in medical imaging to complement the opinion of a radiologist, CAD algorithms have begun to be developed for disease detection, diagnosis, and prognosis prediction to complement the opinion of the pathologist. In this paper, we review the recent state of the art CAD technology for digitized histopathology. This paper also briefly describes the development and application of novel image analysis technology for a few specific histopathology related problems being pursued in the United States and Europe

3D Classification of Power Line Scene Using Airborne Lidar Data

Failure to adequately maintain vegetation within a power line corridor has been identified as a main cause of the August 14, 2003 electric power blackout. Such that, timely and accurate corridor mapping and monitoring are indispensible to mitigate such disaster. Moreover, airborne LiDAR (Light Detection And Ranging) has been recently introduced and widely utilized in industries and academies thanks to its potential to automate the data processing for scene analysis including power line corridor mapping. However, today’s corridor mapping practice using LiDAR in industries still remains an expensive manual process that is not suitable for the large-scale, rapid commercial compilation of corridor maps. Additionally, in academies only few studies have developed algorithms capable of recognizing corridor objects in the power line scene, which are mostly based on 2-dimensional classification. Thus, the objective of this dissertation is to develop a 3-dimensional classification system which is able to automatically identify key objects in the power line corridor from large-scale LiDAR data. This dissertation introduces new features for power structures, especially for the electric pylon, and existing features which are derived through diverse piecewise (i.e., point, line and plane) feature extraction, and then constructs a classification model pool by building individual models according to the piecewise feature sets and diverse voltage training samples using Random Forests. Finally, this dissertation proposes a Multiple Classifier System (MCS) which provides an optimal committee of models from the model pool for classification of new incoming power line scene. The proposed MCS has been tested on a power line corridor where medium voltage transmission lines (115 kV and 230 kV) pass. The classification results based on the MCS applied by optimally selecting the pre-built classification models according to the voltage type of the test corridor demonstrate a good accuracy (89.07%) and computationally effective time cost (approximately 4 hours/km) without additional training fees

Frameworks in medical image analysis with deep neural networks

In recent years, deep neural network based medical image analysis has become quite powerful and achieved similar results performance-wise as experts. Consequently, the integration of these tools into the clinical routine as clinical decision support systems is highly desired. The benefits of automatic image analysis for clinicians are massive, ranging from improved diagnostic as well as treatment quality to increased time-efficiency through automated structured reporting. However, implementations in the literature revealed a significant lack of standardization in pipeline building resulting in low reproducibility, high complexity through extensive knowledge requirements for building state-of-the-art pipelines, and difficulties for application in clinical research. The main objective of this work is the standardization of pipeline building in deep neural network based medical image segmentation and classification. This is why the Python frameworks MIScnn for medical image segmentation and AUCMEDI for medical image classification are proposed which simplify the implementation process through intuitive building blocks eliminating the need for time-consuming and error-prone implementation of common components from scratch. The proposed frameworks include state-of-the-art methodology, follow outstanding open-source principles like extensive documentation as well as stability, offer rapid as well as simple application capabilities for deep learning experts as well as clinical researchers, and provide cutting-edge high-performance competitive with the strongest implementations in the literature. As secondary objectives, this work presents more than a dozen in-house studies as well as discusses various external studies utilizing the proposed frameworks in order to prove the capabilities of standardized medical image analysis. The presented studies demonstrate excellent predictive capabilities in applications ranging from COVID-19 detection in computed tomography scans to the integration into a clinical study workflow for Gleason grading of prostate cancer microscopy sections and advance the state-of-the-art in medical image analysis by simplifying experimentation setups for research. Furthermore, studies for increasing reproducibility in performance assessment of medical image segmentation are presented including an open-source metric library for standardized evaluation and a community guideline on proper metric usage. The proposed contributions in this work improve the knowledge representation of the field, enable rapid as well as high-performing applications, facilitate further research, and strengthen the reproducibility of future studies

Benchmarking and survey of explanation methods for black box models

The rise of sophisticated black-box machine learning models in Artificial Intelligence systems has prompted the need for explanation methods that reveal how these models work in an understandable way to users and decision makers. Unsurprisingly, the state-of-the-art exhibits currently a plethora of explainers providing many different types of explanations. With the aim of providing a compass for researchers and practitioners, this paper proposes a categorization of explanation methods from the perspective of the type of explanation they return, also considering the different input data formats. The paper accounts for the most representative explainers to date, also discussing similarities and discrepancies of returned explanations through their visual appearance. A companion website to the paper is provided as a continuous update to new explainers as they appear. Moreover, a subset of the most robust and widely adopted explainers, are benchmarked with respect to a repertoire of quantitative metrics