Adaptive Data Storage and Placement in Distributed Database Systems

Distributed database systems are widely used to provide scalable storage, update and query facilities for application data. Distributed databases primarily use data replication and data partitioning to spread load across nodes or sites. The presence of hotspots in workloads, however, can result in imbalanced load on the distributed system resulting in performance degradation. Moreover, updates to partitioned and replicated data can require expensive distributed coordination to ensure that they are applied atomically and consistently. Additionally, data storage formats, such as row and columnar layouts, can significantly impact latencies of mixed transactional and analytical workloads. Consequently, how and where data is stored among the sites in a distributed database can significantly affect system performance, particularly if the workload is not known ahead of time. To address these concerns, this thesis proposes adaptive data placement and storage techniques for distributed database systems. This thesis demonstrates that the performance of distributed database systems can be improved by automatically adapting how and where data is stored by leveraging online workload information. A two-tiered architecture for adaptive distributed database systems is proposed that includes an adaptation advisor that decides at which site(s) and how transactions execute. The adaptation advisor makes these decisions based on submitted transactions. This design is used in three adaptive distributed database systems presented in this thesis: (i) DynaMast that efficiently transfers data mastership to guarantee single-site transactions while maintaining well-understood and established transactional semantics, (ii) MorphoSys that selectively and adaptively replicates, partitions and remasters data based on a learned cost model to improve transaction processing, and (iii) Proteus that uses learned workload models to predictively and adaptively change storage layouts to support both high transactional throughput and low latency analytical queries. Collectively, this thesis is a concrete step towards autonomous database systems that allow users to specify only the data to store and the queries to execute, leaving the system to judiciously choose the storage and execution mechanisms to deliver high performance

Scaling Up Concurrent Analytical Workloads on Multi-Core Servers

Today, an ever-increasing number of researchers, businesses, and data scientists collect and analyze massive amounts of data in database systems. The database system needs to process the resulting highly concurrent analytical workloads by exploiting modern multi-socket multi-core processor systems with non-uniform memory access (NUMA) architectures and increasing memory sizes. Conventional execution engines, however, are not designed for many cores, and neither scale nor perform efficiently on modern multi-core NUMA architectures. Firstly, their query-centric approach, where each query is optimized and evaluated independently, can result in unnecessary contention for hardware resources due to redundant work found across queries in highly concurrent workloads. Secondly, they are unaware of the non-uniform memory access costs and the underlying hardware topology, incurring unnecessarily expensive memory accesses and bandwidth saturation. In this thesis, we show how these scalability and performance impediments can be solved by exploiting sharing among concurrent queries and incorporating NUMA-aware adaptive task scheduling and data placement strategies in the execution engine. Regarding sharing, we identify and categorize state-of-the-art techniques for sharing data and work across concurrent queries at run-time into two categories: reactive sharing, which shares intermediate results across common query sub-plans, and proactive sharing, which builds a global query plan with shared operators to evaluate queries. We integrate the original research prototypes that introduce reactive and proactive sharing, perform a sensitivity analysis, and show how and when each technique benefits performance. Our most significant finding is that reactive and proactive sharing can be combined to exploit the advantages of both sharing techniques for highly concurrent analytical workloads. Regarding NUMA-awareness, we identify, implement, and compare various combinations of task scheduling and data placement strategies under a diverse set of highly concurrent analytical workloads. We develop a prototype based on a commercial main-memory column-store database system. Our most significant finding is that there is no single strategy for task scheduling and data placement that is best for all workloads. In specific, inter-socket stealing of memory-intensive tasks can hurt overall performance, and unnecessary partitioning of data across sockets involves an overhead. For this reason, we implement algorithms that adapt task scheduling and data placement to the workload at run-time. Our experiments show that both sharing and NUMA-awareness can significantly improve the performance and scalability of highly concurrent analytical workloads on modern multi-core servers. Thus, we argue that sharing and NUMA-awareness are key factors for supporting faster processing of big data analytical applications, fully exploiting the hardware resources of modern multi-core servers, and for more responsive user experience

Data Management Solutions for Tackling Big Data Variety

Variety is one of the three defining characteristics of Big Data; the others being Volume and Velocity. There are several aspects of this data variety: diversity in data formats (text, video, audio) and structure (relational, graph etc), variety in access methodologies(OLTP, OLAP), and distribution heterogeneity within the workloads (read-heavy, high contention). Data management solutions for modern-day applications need to tackle this variety.This dissertation provides an understanding of the challenges associated with the different elements of variety, and proposes several solutions for efficiently handling its various aspects. First, the dissertation studies the challenges related to variety in data structure and access methodologies, and the resultant heterogeneity at the data infrastructure level. Applications now employ several data-processing engines with different underlying representations, like row, column, graph etc., to process their data. We propose Janus, which introduces a novel data-movement pipeline, which enables the use of different representations to support both high throughput of transactions and diverse analytics, while still ensuring consistent real-time analytics in a scale-out setting. Janus partitions the data at different representations, and allows distributed transactions and diverse partitioning strategies at the representations. Then, we propose Typhon and Cerberus, which define and enforce consistency semantics for application data spread across representations. Second, this dissertation proposes solutions for handling distribution heterogeneity within the workloads. Workloads can have have skewed distribution in terms of operation-type, data access or temporal variation. We propose strongly-consistent quorum reads for Raft-like consensus protocols, which can be utilized to scale read-heavy workloads. For supporting high contention transaction workloads, we integrate an existing dynamic timestamp allocation based concurrency control mechanism in a distributed OLTP setting, and analyze its performance. Third, we study IoT applications, which have to deal with both physical heterogeneity of the sensors, as well asdiverse data-processing demands. We propose a multi-representation based architecture catering to IoT applications, and also present the initial design of M-stream, a computation framework for enabling integration and monitoring of uncertain data from multiplesensors. Through analysis, illustrative examples and extensive evaluation of the proposed protocols, this dissertation demonstrates that the proposed solutions can be employed for efficiently handling the different aspects of variety of data-intensive applications

Data-intensive Systems on Modern Hardware : Leveraging Near-Data Processing to Counter the Growth of Data

Over the last decades, a tremendous change toward using information technology in almost every daily routine of our lives can be perceived in our society, entailing an incredible growth of data collected day-by-day on Web, IoT, and AI applications. At the same time, magneto-mechanical HDDs are being replaced by semiconductor storage such as SSDs, equipped with modern Non-Volatile Memories, like Flash, which yield significantly faster access latencies and higher levels of parallelism. Likewise, the execution speed of processing units increased considerably as nowadays server architectures comprise up to multiple hundreds of independently working CPU cores along with a variety of specialized computing co-processors such as GPUs or FPGAs. However, the burden of moving the continuously growing data to the best fitting processing unit is inherently linked to today’s computer architecture that is based on the data-to-code paradigm. In the light of Amdahl's Law, this leads to the conclusion that even with today's powerful processing units, the speedup of systems is limited since the fraction of parallel work is largely I/O-bound. Therefore, throughout this cumulative dissertation, we investigate the paradigm shift toward code-to-data, formally known as Near-Data Processing (NDP), which relieves the contention on the I/O bus by offloading processing to intelligent computational storage devices, where the data is originally located. Firstly, we identified Native Storage Management as the essential foundation for NDP due to its direct control of physical storage management within the database. Upon this, the interface is extended to propagate address mapping information and to invoke NDP functionality on the storage device. As the former can become very large, we introduce Physical Page Pointers as one novel NDP abstraction for self-contained immutable database objects. Secondly, the on-device navigation and interpretation of data are elaborated. Therefore, we introduce cross-layer Parsers and Accessors as another NDP abstraction that can be executed on the heterogeneous processing capabilities of modern computational storage devices. Thereby, the compute placement and resource configuration per NDP request is identified as a major performance criteria. Our experimental evaluation shows an improvement in the execution durations of 1.4x to 2.7x compared to traditional systems. Moreover, we propose a framework for the automatic generation of Parsers and Accessors on FPGAs to ease their application in NDP. Thirdly, we investigate the interplay of NDP and modern workload characteristics like HTAP. Therefore, we present different offloading models and focus on an intervention-free execution. By propagating the Shared State with the latest modifications of the database to the computational storage device, it is able to process data with transactional guarantees. Thus, we achieve to extend the design space of HTAP with NDP by providing a solution that optimizes for performance isolation, data freshness, and the reduction of data transfers. In contrast to traditional systems, we experience no significant drop in performance when an OLAP query is invoked but a steady and 30% faster throughput. Lastly, in-situ result-set management and consumption as well as NDP pipelines are proposed to achieve flexibility in processing data on heterogeneous hardware. As those produce final and intermediary results, we continue investigating their management and identified that an on-device materialization comes at a low cost but enables novel consumption modes and reuse semantics. Thereby, we achieve significant performance improvements of up to 400x by reusing once materialized results multiple times

Resource-efficient processing of large data volumes

The complex system environment of data processing applications makes it very challenging to achieve high resource efficiency. In this thesis, we develop solutions that improve resource efficiency at multiple system levels by focusing on three scenarios that are relevant—but not limited—to database management systems. First, we address the challenge of understanding complex systems by analyzing memory access characteristics via efficient memory tracing. Second, we leverage information about memory access characteristics to optimize the cache usage of algorithms and to avoid cache pollution by applying hardware-based cache partitioning. Third, after optimizing resource usage within a multicore processor, we optimize resource usage across multiple computer systems by addressing the problem of resource contention for bulk loading, i.e., ingesting large volumes of data into the system. We develop a distributed bulk loading mechanism, which utilizes network bandwidth and compute power more efficiently and improves both bulk loading throughput and query processing performance

Supporting Efficient Database Processing in Mapreduce

Ph.DDOCTOR OF PHILOSOPH

Master of Science

thesisEfficient movement of massive amounts of data over high-speed networks at high throughput is essential for a modern-day in-memory storage system. In response to the growing needs of throughput and latency demands at scale, a new class of database systems was developed in recent years. The development of these systems was guided by increased access to high throughput, low latency network fabrics, and declining cost of Dynamic Random Access Memory (DRAM). These systems were designed with On-Line Transactional Processing (OLTP) workloads in mind, and, as a result, are optimized for fast dispatch and perform well under small request-response scenarios. However, massive server responses such as those for range queries and data migration for load balancing poses challenges for this design. This thesis analyzes the effects of large transfers on scale-out systems through the lens of a modern Network Interface Card (NIC). The present-day NIC offers new and exciting opportunities and challenges for large transfers, but using them efficiently requires smart data layout and concurrency control. We evaluated the impact of modern NICs in designing data layout by measuring transmit performance and full system impact by observing the effects of Direct Memory Access (DMA), Remote Direct Memory Access (RDMA), and caching improvements such as Intel® Data Direct I/O (DDIO). We discovered that use of techniques such as Zero Copy yield around 25% savings in CPU cycles and a 50% reduction in the memory bandwidth utilization on a server by using a client-assisted design with records that are not updated in place. We also set up experiments that underlined the bottlenecks in the current approach to data migration in RAMCloud and propose guidelines for a fast and efficient migration protocol for RAMCloud

Architectural Principles for Database Systems on Storage-Class Memory

Database systems have long been optimized to hide the higher latency of storage media, yielding complex persistence mechanisms. With the advent of large DRAM capacities, it became possible to keep a full copy of the data in DRAM. Systems that leverage this possibility, such as main-memory databases, keep two copies of the data in two different formats: one in main memory and the other one in storage. The two copies are kept synchronized using snapshotting and logging. This main-memory-centric architecture yields nearly two orders of magnitude faster analytical processing than traditional, disk-centric ones. The rise of Big Data emphasized the importance of such systems with an ever-increasing need for more main memory. However, DRAM is hitting its scalability limits: It is intrinsically hard to further increase its density. Storage-Class Memory (SCM) is a group of novel memory technologies that promise to alleviate DRAM’s scalability limits. They combine the non-volatility, density, and economic characteristics of storage media with the byte-addressability and a latency close to that of DRAM. Therefore, SCM can serve as persistent main memory, thereby bridging the gap between main memory and storage. In this dissertation, we explore the impact of SCM as persistent main memory on database systems. Assuming a hybrid SCM-DRAM hardware architecture, we propose a novel software architecture for database systems that places primary data in SCM and directly operates on it, eliminating the need for explicit IO. This architecture yields many benefits: First, it obviates the need to reload data from storage to main memory during recovery, as data is discovered and accessed directly in SCM. Second, it allows replacing the traditional logging infrastructure by fine-grained, cheap micro-logging at data-structure level. Third, secondary data can be stored in DRAM and reconstructed during recovery. Fourth, system runtime information can be stored in SCM to improve recovery time. Finally, the system may retain and continue in-flight transactions in case of system failures. However, SCM is no panacea as it raises unprecedented programming challenges. Given its byte-addressability and low latency, processors can access, read, modify, and persist data in SCM using load/store instructions at a CPU cache line granularity. The path from CPU registers to SCM is long and mostly volatile, including store buffers and CPU caches, leaving the programmer with little control over when data is persisted. Therefore, there is a need to enforce the order and durability of SCM writes using persistence primitives, such as cache line flushing instructions. This in turn creates new failure scenarios, such as missing or misplaced persistence primitives. We devise several building blocks to overcome these challenges. First, we identify the programming challenges of SCM and present a sound programming model that solves them. Then, we tackle memory management, as the first required building block to build a database system, by designing a highly scalable SCM allocator, named PAllocator, that fulfills the versatile needs of database systems. Thereafter, we propose the FPTree, a highly scalable hybrid SCM-DRAM persistent B+-Tree that bridges the gap between the performance of transient and persistent B+-Trees. Using these building blocks, we realize our envisioned database architecture in SOFORT, a hybrid SCM-DRAM columnar transactional engine. We propose an SCM-optimized MVCC scheme that eliminates write-ahead logging from the critical path of transactions. Since SCM -resident data is near-instantly available upon recovery, the new recovery bottleneck is rebuilding DRAM-based data. To alleviate this bottleneck, we propose a novel recovery technique that achieves nearly instant responsiveness of the database by accepting queries right after recovering SCM -based data, while rebuilding DRAM -based data in the background. Additionally, SCM brings new failure scenarios that existing testing tools cannot detect. Hence, we propose an online testing framework that is able to automatically simulate power failures and detect missing or misplaced persistence primitives. Finally, our proposed building blocks can serve to build more complex systems, paving the way for future database systems on SCM