A bibliography on parallel and vector numerical algorithms

This is a bibliography of numerical methods. It also includes a number of other references on machine architecture, programming language, and other topics of interest to scientific computing. Certain conference proceedings and anthologies which have been published in book form are listed also

Optimal processor assignment for pipeline computations

The availability of large scale multitasked parallel architectures introduces the following processor assignment problem for pipelined computations. Given a set of tasks and their precedence constraints, along with their experimentally determined individual responses times for different processor sizes, find an assignment of processor to tasks. Two objectives are of interest: minimal response given a throughput requirement, and maximal throughput given a response time requirement. These assignment problems differ considerably from the classical mapping problem in which several tasks share a processor; instead, it is assumed that a large number of processors are to be assigned to a relatively small number of tasks. Efficient assignment algorithms were developed for different classes of task structures. For a p processor system and a series parallel precedence graph with n constituent tasks, an O(np2) algorithm is provided that finds the optimal assignment for the response time optimization problem; it was found that the assignment optimizing the constrained throughput in O(np2log p) time. Special cases of linear, independent, and tree graphs are also considered

Design and Analysis of Optical Interconnection Networks for Parallel Computation.

In this doctoral research, we propose several novel protocols and topologies for the interconnection of massively parallel processors. These new technologies achieve considerable improvements in system performance and structure simplicity. Currently, synchronous protocols are used in optical TDM buses. The major disadvantage of a synchronous protocol is the waste of packet slots. To offset this inherent drawback of synchronous TDM, a pipelined asynchronous TDM optical bus is proposed. The simulation results show that the performance of the proposed bus is significantly better than that of known pipelined synchronous TDM optical buses. Practically, the computation power of the plain TDM protocol is limited. Various extensions must be added to the system. In this research, a new pipelined optical TDM bus for implementing a linear array parallel computer architecture is proposed. The switches on the receiving segment of the bus can be dynamically controlled, which make the system highly reconfigurable. To build large and scalable systems, we need new network architectures that are suitable for optical interconnections. A new kind of reconfigurable bus called segmented bus is introduced to achieve reduced structure simplicity and increased concurrency. We show that parallel architectures based on segmented buses are versatile by showing that it can simulate parallel communication patterns supported by a wide variety of networks with small slowdown factors. New kinds of interconnection networks, the hypernetworks, have been proposed recently. Compared with point-to-point networks, they allow for increased resource-sharing and communication bandwidth utilization, and they are especially suitable for optical interconnects. One way to derive a hypernetwork is by finding the dual of a point-to-point network. Hypercube Q\sb{n}, where n is the dimension, is a very popular point-to-point network. It is interesting to construct hypernetworks from the dual Q\sbsp{n}{*} of hypercube of Q\sb{n}. In this research, the properties of Q\sbsp{n}{*} are investigated and a set of fundamental data communication algorithms for Q\sbsp{n}{*} are presented. The results indicate that the Q\sbsp{n}{*} hypernetwork is a useful and promising interconnection structure for high-performance parallel and distributed computing systems

Efficient Mapping of Neural Network Models on a Class of Parallel Architectures.

This dissertation develops a formal and systematic methodology for efficient mapping of several contemporary artificial neural network (ANN) models on k-ary n-cube parallel architectures (KNC\u27s). We apply the general mapping to several important ANN models including feedforward ANN\u27s trained with backpropagation algorithm, radial basis function networks, cascade correlation learning, and adaptive resonance theory networks. Our approach utilizes a parallel task graph representing concurrent operations of the ANN model during training. The mapping of the ANN is performed in two steps. First, the parallel task graph of the ANN is mapped to a virtual KNC of compatible dimensionality. This involves decomposing each operation into its atomic tasks. Second, the dimensionality of the virtual KNC architecture is recursively reduced through a sequence of transformations until a desired metric is optimized. We refer to this process as folding the virtual architecture. The optimization criteria we consider in this dissertation are defined in terms of the iteration time of the algorithm on the folded architecture. If necessary, the mapping scheme may utilize a subset of the processors of a given KNC architecture if it results in the most efficient simulation. A unique feature of our mapping is that it systematically selects an appropriate degree of parallelism leading to a highly efficient realization of the ANN model on KNC architectures. A novel feature of our work is its ability to efficiently map unit-allocating ANN\u27s. These networks possess a dynamic structure which grows during training. We present a highly efficient scheme for simulating such networks on existing KNC parallel architectures. We assume an upper bound on size of the neural network We perform the folding such that the iteration time of the largest network is minimized. We show that our mapping leads to near-optimal simulation of smaller instances of the neural network. In addition, based on our mapping no data migration or task rescheduling is needed as the size of network grows

Multinode reconfigurable pipeline computer

A multinode parallel-processing computer is made up of a plurality of innerconnected, large capacity nodes each including a reconfigurable pipeline of functional units such as Integer Arithmetic Logic Processors, Floating Point Arithmetic Processors, Special Purpose Processors, etc. The reconfigurable pipeline of each node is connected to a multiplane memory by a Memory-ALU switch NETwork (MASNET). The reconfigurable pipeline includes three (3) basic substructures formed from functional units which have been found to be sufficient to perform the bulk of all calculations. The MASNET controls the flow of signals from the memory planes to the reconfigurable pipeline and vice versa. the nodes are connectable together by an internode data router (hyperspace router) so as to form a hypercube configuration. The capability of the nodes to conditionally configure the pipeline at each tick of the clock, without requiring a pipeline flush, permits many powerful algorithms to be implemented directly

Deterministic Selection on the Mesh and Hypercube

In this paper we present efficient deterministic algorithms for selection on the mesh connected computers (referred to as the mesh from hereon) and the hypercube. Our algorithm on the mesh runs in time O([n/p] log logp + √p logn) where n is the input size and p is the number of processors. The time bound is significantly better than that of the best existing algorithms when n is large. The run time of our algorithm on the hypercube is O ([n/p] log log p + Ts/p log nM/em\u3e), where Ts/p is the time needed to sort p element on a p-node hypercube. In fact, the same algorithm runs on an network in time O([n/p] log log p +Ts/p log), where Ts/p is the time needed for sorting p keys using p processors (assuming that broadcast and prefix computations take time less than or equal to Ts/p

Polyvalent Parallelizations for Hierarchical Block Matching Motion Estimation

Block matching motion estimation algorithms are widely used in video coding schemes. In this paper,we design an efficient hierarchical block matching motion estimation (HBMME) algorithm on a hypercube multiprocessor. Unlike systolic array designs, this solution is not tied down to specific values of algorithm parameters and thus offers increased flexibility. Moreover, the hypercube network can efficiently handle the non regular data flow of the HBMME algorithm. Our techniques nearly eliminate the occurrence of “difficult” communication patterns, namely many-to-many personalized communication, by replacing them with simple shift operations. These operations have an efficient implementation on most of interconnection networks and thus our techniques can be adapted to other networks as well. With regard to the employed multiprocessor we make no specific assumption about the amount of local memory residing in each processor. Instead, we introduce a free parameter S and assume that each processor has O(S) local memory. By doing so, we handle all the cases of modern multiprocessors, that is fine-grained, medium-grained and coarse-grained multiprocessors and thus our design is quite general

Sublogarithmic deterministic selection on arrays with a reconfigurable optical bus

The linear array with a reconfigurable pipelined bus system (LARPBS) is a newly introduced parallel computational model, where processors are connected by a reconfigurable optical bus. In this paper, we show that the selection problem can be solved on the LARPBS model deterministically in O((loglogN)2/ log log log N) time. To our best knowledge, this is the best deterministic selection algorithm on any model with a reconfigurable optical bus.Yijie Han, Yi Pan and Hong She

Performance analysis of wormhole routing in multicomputer interconnection networks

Perhaps the most critical component in determining the ultimate performance potential of a multicomputer is its interconnection network, the hardware fabric supporting communication among individual processors. The message latency and throughput of such a network are affected by many factors of which topology, switching method, routing algorithm and traffic load are the most significant. In this context, the present study focuses on a performance analysis of k-ary n-cube networks employing wormhole switching, virtual channels and adaptive routing, a scenario of especial interest to current research. This project aims to build upon earlier work in two main ways: constructing new analytical models for k-ary n-cubes, and comparing the performance merits of cubes of different dimensionality. To this end, some important topological properties of k-ary n-cubes are explored initially; in particular, expressions are derived to calculate the number of nodes at/within a given distance from a chosen centre. These results are important in their own right but their primary significance here is to assist in the construction of new and more realistic analytical models of wormhole-routed k-ary n-cubes. An accurate analytical model for wormhole-routed k-ary n-cubes with adaptive routing and uniform traffic is then developed, incorporating the use of virtual channels and the effect of locality in the traffic pattern. New models are constructed for wormhole k-ary n-cubes, with the ability to simulate behaviour under adaptive routing and non-uniform communication workloads, such as hotspot traffic, matrix-transpose and digit-reversal permutation patterns. The models are equally applicable to unidirectional and bidirectional k-ary n-cubes and are significantly more realistic than any in use up to now. With this level of accuracy, the effect of each important network parameter on the overall network performance can be investigated in a more comprehensive manner than before. Finally, k-ary n-cubes of different dimensionality are compared using the new models. The comparison takes account of various traffic patterns and implementation costs, using both pin-out and bisection bandwidth as metrics. Networks with both normal and pipelined channels are considered. While previous similar studies have only taken account of network channel costs, our model incorporates router costs as well thus generating more realistic results. In fact the results of this work differ markedly from those yielded by earlier studies which assumed deterministic routing and uniform traffic, illustrating the importance of using accurate models to conduct such analyses