Model-based Approach for Product Requirement Representation and Generation in Product Lifecycle Management

The requirement specification is an official documentation activity, which is a collection of certain information to specify the product and its life-cycle activities in terms of functions, features, performance, constraints, production, maintenance, disposal process, etc. It contains mainly two phases; product requirement generation and representation. Appropriate criteria for the product design and further life-cycle activities are determined based on the requirement specification as well as the interrelations of product requirements with other life-cycle information such as; materials, manufacturing, working environments, finance, and regulations. The determination of these criteria is normally error-prone. It is difficult to identify and maintain the completeness and consistency of the requirement information across the product life-cycle. Product requirements are normally expressed in abstract and conceptual terms with document base representation which yields unstructured and heterogeneous information base and it is unsuitable for intelligent machine interpretations. Most of the time determination of the requirements and development of the requirement specification documents are performed by the designers/engineers based on their own experiences that might lead to incompleteness and inconsistency. This research work proposes a unique model-based product requirement representation and generation architecture to aid designers/engineers to specify product requirements across the product life-cycle. A requirement knowledge management architecture is developed to enhance the capabilities of the current Product Life-cycle Management (PLM) platforms in terms of product requirement representation and generation. After a systematic study on the categorization of product requirements, an ontological framework is developed for the specification of the requirements and related product life-cycle domain information. The ontological framework is embedded in an existing PLM system. A computational platform is developed and integrated into the PLM system for the intelligent machine processing of the product requirements and related information. This architecture supports product requirement representation in terms of the ontological framework and further information retrieval, inference, and requirement text generation activities

Investigating Genotype-Phenotype relationship extraction from biomedical text

During the last decade biomedicine has developed at a tremendous pace. Every day a lot of biomedical papers are published and a large amount of new information is produced. To help enable automated and human interaction in the multitude of applications of this biomedical data, the need for Natural Language Processing systems to process the vast amount of new information is increasing. Our main purpose in this research project is to extract the relationships between genotypes and phenotypes mentioned in the biomedical publications. Such a system provides important and up-to-date data for database construction and updating, and even text summarization. To achieve this goal we had to solve three main problems: finding genotype names, finding phenotype names, and finally extracting phenotype--genotype interactions. We consider all these required modules in a comprehensive system and propose a promising solution for each of them taking into account available tools and resources. BANNER, an open source biomedical named entity recognition system, which has achieved good results in detecting genotypes, has been used for the genotype name recognition task. We were the first group to start working on phenotype name recognition. We have developed two different systems (rule-based and machine-learning based) for extracting phenotype names from text. These systems incorporated the available knowledge from the Unified Medical Language System metathesaurus and the Human Phenotype Onotolgy (HPO). As there was no available annotated corpus for phenotype names, we created a valuable corpus with annotated phenotype names using information available in HPO and a self-training method which can be used for future research. To solve the final problem of this project i.e. , phenotype--genotype relationship extraction, a machine learning method has been proposed. As there was no corpus available for this task and it was not possible for us to annotate a sufficiently large corpus manually, a semi-automatic approach has been used to annotate a small corpus and a self-training method has been proposed to annotate more sentences and enlarge this corpus. A test set was manually annotated by an expert. In addition to having phenotype-genotype relationships annotated, the test set contains important comments about the nature of these relationships. The evaluation results related to each system demonstrate the significantly good performance of all the proposed methods

HFST-SweNER – A New NER Resource for Swedish

Named entity recognition (NER) is a knowledge-intensive information extraction task that is used for recognizing textual mentions of entities that belong to a predefined set of categories, such as locations, organizations and time expressions. NER is a challenging, difficult, yet essential preprocessing technology for many natural language processing applications, and particularly crucial for language understanding. NER has been actively explored in academia and in industry especially during the last years due to the advent of social media data. This paper describes the conversion, modeling and adaptation of a Swedish NER system from a hybrid environment, with integrated functionality from various processing components, to the Helsinki Finite-State Transducer Technology (HFST) platform. This new HFST-based NER (HFST-SweNER) is a full-fledged open source implementation that supports a variety of generic named entity types and consists of multiple, reusable resource layers, e.g., various n-gram-based named entity lists (gazetteers).Peer reviewe

Mining the Medical and Patent Literature to Support Healthcare and Pharmacovigilance

Recent advancements in healthcare practices and the increasing use of information technology in the medical domain has lead to the rapid generation of free-text data in forms of scientific articles, e-health records, patents, and document inventories. This has urged the development of sophisticated information retrieval and information extraction technologies. A fundamental requirement for the automatic processing of biomedical text is the identification of information carrying units such as the concepts or named entities. In this context, this work focuses on the identification of medical disorders (such as diseases and adverse effects) which denote an important category of concepts in the medical text. Two methodologies were investigated in this regard and they are dictionary-based and machine learning-based approaches. Futhermore, the capabilities of the concept recognition techniques were systematically exploited to build a semantic search platform for the retrieval of e-health records and patents. The system facilitates conventional text search as well as semantic and ontological searches. Performance of the adapted retrieval platform for e-health records and patents was evaluated within open assessment challenges (i.e. TRECMED and TRECCHEM respectively) wherein the system was best rated in comparison to several other competing information retrieval platforms. Finally, from the medico-pharma perspective, a strategy for the identification of adverse drug events from medical case reports was developed. Qualitative evaluation as well as an expert validation of the developed system's performance showed robust results. In conclusion, this thesis presents approaches for efficient information retrieval and information extraction from various biomedical literature sources in the support of healthcare and pharmacovigilance. The applied strategies have potential to enhance the literature-searches performed by biomedical, healthcare, and patent professionals. The applied strategies have potential to enhance the literature-searches performed by biomedical, healthcare, and patent professionals. This can promote the literature-based knowledge discovery, improve the safety and effectiveness of medical practices, and drive the research and development in medical and healthcare arena

Proceedings of the 2nd IUI Workshop on Interacting with Smart Objects

These are the Proceedings of the 2nd IUI Workshop on Interacting with Smart Objects. Objects that we use in our everyday life are expanding their restricted interaction capabilities and provide functionalities that go far beyond their original functionality. They feature computing capabilities and are thus able to capture information, process and store it and interact with their environments, turning them into smart objects

Group activity recognition and analysis: concept, model and service architecture

This thesis presents a new method for representing and recognizing human group activities using sensors, showing how real-world group activity scenarios can be automatically detected and understood by combining sensor data from smartphones, smartwatches, and Internet-of-Things devices. This research also introduces a generic service-oriented architecture for cloud-based group activity recognition