2,147 research outputs found

    Acta Cybernetica : Tomus 6. Fasciculus 4.

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    An Elegant Algorithm for the Construction of Suffix Arrays

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    The suffix array is a data structure that finds numerous applications in string processing problems for both linguistic texts and biological data. It has been introduced as a memory efficient alternative for suffix trees. The suffix array consists of the sorted suffixes of a string. There are several linear time suffix array construction algorithms (SACAs) known in the literature. However, one of the fastest algorithms in practice has a worst case run time of O(n2)O(n^2). The problem of designing practically and theoretically efficient techniques remains open. In this paper we present an elegant algorithm for suffix array construction which takes linear time with high probability; the probability is on the space of all possible inputs. Our algorithm is one of the simplest of the known SACAs and it opens up a new dimension of suffix array construction that has not been explored until now. Our algorithm is easily parallelizable. We offer parallel implementations on various parallel models of computing. We prove a lemma on the \ell-mers of a random string which might find independent applications. We also present another algorithm that utilizes the above algorithm. This algorithm is called RadixSA and has a worst case run time of O(nlogn)O(n\log{n}). RadixSA introduces an idea that may find independent applications as a speedup technique for other SACAs. An empirical comparison of RadixSA with other algorithms on various datasets reveals that our algorithm is one of the fastest algorithms to date. The C++ source code is freely available at http://www.engr.uconn.edu/~man09004/radixSA.zi

    The Conditional Strong Matching Preclusion of Augmented Cubes

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    The strong matching preclusion is a measure for the robustness of interconnection networks in the presence of node and/or link failures. However, in the case of random link and/or node failures, it is unlikely to find all the faults incident and/or adjacent to the same vertex. This motivates Park et al. to introduce the conditional strong matching preclusion of a graph. In this paper we consider the conditional strong matching preclusion problem of the augmented cube AQnAQ_n, which is a variation of the hypercube QnQ_n that possesses favorable properties
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