WG1N5315 - Response to Call for AIC evaluation methodologies and compression technologies for medical images: LAR Codec

This document presents the LAR image codec as a response to Call for AIC evaluation methodologies and compression technologies for medical images.This document describes the IETR response to the specific call for contributions of medical imaging technologies to be considered for AIC. The philosophy behind our coder is not to outperform JPEG2000 in compression; our goal is to propose an open source, royalty free, alternative image coder with integrated services. While keeping the compression performances in the same range as JPEG2000 but with lower complexity, our coder also provides services such as scalability, cryptography, data hiding, lossy to lossless compression, region of interest, free region representation and coding

Medical Image Compression based on ROI using Integer Wavelet Transform

Medical imaging refers to techniques and processes used to create images of various parts of the human body for diagnostic and treatment purposes within digital health. With the increased use of digital images in clinical settings, it has become necessary to use various compression methods, both lossless and lossy, in order to reduce their cost of storage or transmission. While lossy compression alternatives allow high compression rates, there are legal limitations that such images including MRI, ultrasound, X-Ray and CT-Scan should be stored in a format without loss of information. This work proposes a digital image compression mechanism compatible with the Digital Imaging and Communications in Medicine (DICOM) standard that takes advantage of the IDWT capabilities to preserve the diagnostic quality of the regions of interest, through lossless encoding, while the rest of the image, composed of zones less relevant, is compressed with for JPEG compression. The results, in terms of Compression Ratio, MSE and PSNR are found to be quite satisfactory both quantitatively and qualitatively

High-performance compression of visual information - A tutorial review - Part I : Still Pictures

Digital images have become an important source of information in the modern world of communication systems. In their raw form, digital images require a tremendous amount of memory. Many research efforts have been devoted to the problem of image compression in the last two decades. Two different compression categories must be distinguished: lossless and lossy. Lossless compression is achieved if no distortion is introduced in the coded image. Applications requiring this type of compression include medical imaging and satellite photography. For applications such as video telephony or multimedia applications, some loss of information is usually tolerated in exchange for a high compression ratio. In this two-part paper, the major building blocks of image coding schemes are overviewed. Part I covers still image coding, and Part II covers motion picture sequences. In this first part, still image coding schemes have been classified into predictive, block transform, and multiresolution approaches. Predictive methods are suited to lossless and low-compression applications. Transform-based coding schemes achieve higher compression ratios for lossy compression but suffer from blocking artifacts at high-compression ratios. Multiresolution approaches are suited for lossy as well for lossless compression. At lossy high-compression ratios, the typical artifact visible in the reconstructed images is the ringing effect. New applications in a multimedia environment drove the need for new functionalities of the image coding schemes. For that purpose, second-generation coding techniques segment the image into semantically meaningful parts. Therefore, parts of these methods have been adapted to work for arbitrarily shaped regions. In order to add another functionality, such as progressive transmission of the information, specific quantization algorithms must be defined. A final step in the compression scheme is achieved by the codeword assignment. Finally, coding results are presented which compare stateof- the-art techniques for lossy and lossless compression. The different artifacts of each technique are highlighted and discussed. Also, the possibility of progressive transmission is illustrated

A State Table SPHIT Approach for Modified Curvelet-based Medical Image Compression

Medical imaging plays a significant role in clinical practice. Storing and transferring a large volume of images can be complex and inefficient. This paper presents the development of a new compression technique that combines the fast discrete curvelet transform (FDCvT) with state table set partitioning in the hierarchical trees (STS) encoding scheme. The curvelet transform is an extension of the wavelet transform algorithm that represents data based on scale and position. Initially, the medical image was decomposed using the FDCvT algorithm. The FDCvT algorithm creates symmetrical values for the detail coefficients, and these coefficients are modified to improve the efficiency of the algorithm. The curvelet coefficients are then encoded using the STS and differential pulse-code modulation (DPCM). The greatest amount of energy is contained in the coarse coefficients, which are encoded using the DPCM method. The finest and modified detail coefficients are encoded using the STS method. A variety of medical modalities, including computed tomography (CT), positron emission tomography (PET), and magnetic resonance imaging (MRI), are used to verify the performance of the proposed technique. Various quality metrics, including peak signal-to-noise ratio (PSNR), compression ratio (CR), and structural similarity index (SSIM), are used to evaluate the compression results. Additionally, the computation time for the encoding (ET) and decoding (DT) processes is measured. The experimental results showed that the PET image obtained higher values of the PSNR and CR. The CT image provides high quality for the reconstructed image, with an SSIM value of 0.96 and the fastest ET of 0.13 seconds. The MRI image has the shortest DT, which is 0.23 seconds

Improving quality of medical image compression using biorthogonal CDF wavelet based on lifting scheme and SPIHT coding

As the coming era is that of digitized medical information, an important challenge to deal with is the storage and transmission requirements of enormous data, including medical images. Compression is one of the indispensable techniques to solve this problem. In this work, we propose an algorithm for medical image compression based on a biorthogonal wavelet transform CDF 9/7 coupled with SPIHT coding algorithm, of which we applied the lifting structure to improve the drawbacks of wavelet transform. In order to enhance the compression by our algorithm, we have compared the results obtained with wavelet based filters bank. Experimental results show that the proposed algorithm is superior to traditional methods in both lossy and lossless compression for all tested images. Our algorithm provides very important PSNR and MSSIM values for MRI images

Wavelets and Imaging Informatics: A Review of the Literature

AbstractModern medicine is a field that has been revolutionized by the emergence of computer and imaging technology. It is increasingly difficult, however, to manage the ever-growing enormous amount of medical imaging information available in digital formats. Numerous techniques have been developed to make the imaging information more easily accessible and to perform analysis automatically. Among these techniques, wavelet transforms have proven prominently useful not only for biomedical imaging but also for signal and image processing in general. Wavelet transforms decompose a signal into frequency bands, the width of which are determined by a dyadic scheme. This particular way of dividing frequency bands matches the statistical properties of most images very well. During the past decade, there has been active research in applying wavelets to various aspects of imaging informatics, including compression, enhancements, analysis, classification, and retrieval. This review represents a survey of the most significant practical and theoretical advances in the field of wavelet-based imaging informatics

Lossy to lossless object-based coding of 3-D MRI data

We propose a fully three-dimensional object-based coding system exploiting the diagnostic relevance of the different regions of the volumetric data for rate allocation. The data are first decorrelated via a 3D discrete wavelet transform. The implementation via the lifting steps scheme allows to map integer-to-integer values, enabling lossless coding, and facilitates the definition of the object-based inverse transform. The coding process assigns disjoint segments of the bitstream to the different objects, which can be independently accessed and reconstructed at any up-to-lossless quality. Two fully 3D coding strategies are considered: Embedded Zerotree Coding (EZW-3D) and Multidimensional Layered Zero Coding (MLZC), both generalized for Region of Interest (ROI) based processing. In order to avoid artifacts along region boundaries, some extra coefficients must be encoded for each object. This gives rise to an overheading of the bitstream with respect to the case where the volume is encoded as a whole. The amount of such extra information depends on both the filter length and the decomposition depth. The system is characterized on a set of head magnetic resonance images. Results show that MLZC and EZW-3D have competitive performances. In particular, the best MLZC mode outperforms the other state-of-the-art techniques on one of the datasets for which results are available in the literature

Rate scalable image compression in the wavelet domain

This thesis explores image compression in the wavelet transform domain. This the- sis considers progressive compression based on bit plane coding. The rst part of the thesis investigates the scalar quantisation technique for multidimensional images such as colour and multispectral image. Embedded coders such as SPIHT and SPECK are known to be very simple and e cient algorithms for compression in the wavelet do- main. However, these algorithms require the use of lists to keep track of partitioning processes, and such lists involve high memory requirement during the encoding process. A listless approach has been proposed for multispectral image compression in order to reduce the working memory required. The earlier listless coders are extended into three dimensional coder so that redundancy in the spectral domain can be exploited. Listless implementation requires a xed memory of 4 bits per pixel to represent the state of each transformed coe cient. The state is updated during coding based on test of sig- ni cance. Spectral redundancies are exploited to improve the performance of the coder by modifying its scanning rules and the initial marker/state. For colour images, this is done by conducting a joint the signi cant test for the chrominance planes. In this way, the similarities between the chrominance planes can be exploited during the cod- ing process. Fixed memory listless methods that exploit spectral redundancies enable e cient coding while maintaining rate scalability and progressive transmission. The second part of the thesis addresses image compression using directional filters in the wavelet domain. A directional lter is expected to improve the retention of edge and curve information during compression. Current implementations of hybrid wavelet and directional (HWD) lters improve the contour representation of compressed images, but su er from the pseudo-Gibbs phenomenon in the smooth regions of the images. A di erent approach to directional lters in the wavelet transforms is proposed to remove such artifacts while maintaining the ability to preserve contours and texture. Imple- mentation with grayscale images shows improvements in terms of distortion rates and the structural similarity, especially in images with contours. The proposed transform manages to preserve the directional capability without pseudo-Gibbs artifacts and at the same time reduces the complexity of wavelet transform with directional lter. Fur-ther investigation to colour images shows the transform able to preserve texture and curve.EThOS - Electronic Theses Online ServiceGBUnited Kingdo