Late Fusion Multi-view Clustering via Global and Local Alignment Maximization

Multi-view clustering (MVC) optimally integrates complementary information from different views to improve clustering performance. Although demonstrating promising performance in various applications, most of existing approaches directly fuse multiple pre-specified similarities to learn an optimal similarity matrix for clustering, which could cause over-complicated optimization and intensive computational cost. In this paper, we propose late fusion MVC via alignment maximization to address these issues. To do so, we first reveal the theoretical connection of existing k-means clustering and the alignment between base partitions and the consensus one. Based on this observation, we propose a simple but effective multi-view algorithm termed LF-MVC-GAM. It optimally fuses multiple source information in partition level from each individual view, and maximally aligns the consensus partition with these weighted base ones. Such an alignment is beneficial to integrate partition level information and significantly reduce the computational complexity by sufficiently simplifying the optimization procedure. We then design another variant, LF-MVC-LAM to further improve the clustering performance by preserving the local intrinsic structure among multiple partition spaces. After that, we develop two three-step iterative algorithms to solve the resultant optimization problems with theoretically guaranteed convergence. Further, we provide the generalization error bound analysis of the proposed algorithms. Extensive experiments on eighteen multi-view benchmark datasets demonstrate the effectiveness and efficiency of the proposed LF-MVC-GAM and LF-MVC-LAM, ranging from small to large-scale data items. The codes of the proposed algorithms are publicly available at https://github.com/wangsiwei2010/latefusionalignment

Ultra-Scalable Spectral Clustering and Ensemble Clustering

This paper focuses on scalability and robustness of spectral clustering for extremely large-scale datasets with limited resources. Two novel algorithms are proposed, namely, ultra-scalable spectral clustering (U-SPEC) and ultra-scalable ensemble clustering (U-SENC). In U-SPEC, a hybrid representative selection strategy and a fast approximation method for K-nearest representatives are proposed for the construction of a sparse affinity sub-matrix. By interpreting the sparse sub-matrix as a bipartite graph, the transfer cut is then utilized to efficiently partition the graph and obtain the clustering result. In U-SENC, multiple U-SPEC clusterers are further integrated into an ensemble clustering framework to enhance the robustness of U-SPEC while maintaining high efficiency. Based on the ensemble generation via multiple U-SEPC's, a new bipartite graph is constructed between objects and base clusters and then efficiently partitioned to achieve the consensus clustering result. It is noteworthy that both U-SPEC and U-SENC have nearly linear time and space complexity, and are capable of robustly and efficiently partitioning ten-million-level nonlinearly-separable datasets on a PC with 64GB memory. Experiments on various large-scale datasets have demonstrated the scalability and robustness of our algorithms. The MATLAB code and experimental data are available at https://www.researchgate.net/publication/330760669.Comment: To appear in IEEE Transactions on Knowledge and Data Engineering, 201

Multigranularity Representations for Human Inter-Actions: Pose, Motion and Intention

Tracking people and their body pose in videos is a central problem in computer vision. Standard tracking representations reason about temporal coherence of detected people and body parts. They have difficulty tracking targets under partial occlusions or rare body poses, where detectors often fail, since the number of training examples is often too small to deal with the exponential variability of such configurations. We propose tracking representations that track and segment people and their body pose in videos by exploiting information at multiple detection and segmentation granularities when available, whole body, parts or point trajectories. Detections and motion estimates provide contradictory information in case of false alarm detections or leaking motion affinities. We consolidate contradictory information via graph steering, an algorithm for simultaneous detection and co-clustering in a two-granularity graph of motion trajectories and detections, that corrects motion leakage between correctly detected objects, while being robust to false alarms or spatially inaccurate detections. We first present a motion segmentation framework that exploits long range motion of point trajectories and large spatial support of image regions. We show resulting video segments adapt to targets under partial occlusions and deformations. Second, we augment motion-based representations with object detection for dealing with motion leakage. We demonstrate how to combine dense optical flow trajectory affinities with repulsions from confident detections to reach a global consensus of detection and tracking in crowded scenes. Third, we study human motion and pose estimation. We segment hard to detect, fast moving body limbs from their surrounding clutter and match them against pose exemplars to detect body pose under fast motion. We employ on-the-fly human body kinematics to improve tracking of body joints under wide deformations. We use motion segmentability of body parts for re-ranking a set of body joint candidate trajectories and jointly infer multi-frame body pose and video segmentation. We show empirically that such multi-granularity tracking representation is worthwhile, obtaining significantly more accurate multi-object tracking and detailed body pose estimation in popular datasets

Distributed Coupled Multi-Agent Stochastic Optimization

This work develops effective distributed strategies for the solution of constrained multi-agent stochastic optimization problems with coupled parameters across the agents. In this formulation, each agent is influenced by only a subset of the entries of a global parameter vector or model, and is subject to convex constraints that are only known locally. Problems of this type arise in several applications, most notably in disease propagation models, minimum-cost flow problems, distributed control formulations, and distributed power system monitoring. This work focuses on stochastic settings, where a stochastic risk function is associated with each agent and the objective is to seek the minimizer of the aggregate sum of all risks subject to a set of constraints. Agents are not aware of the statistical distribution of the data and, therefore, can only rely on stochastic approximations in their learning strategies. We derive an effective distributed learning strategy that is able to track drifts in the underlying parameter model. A detailed performance and stability analysis is carried out showing that the resulting coupled diffusion strategy converges at a linear rate to an $O(\mu)-$neighborhood of the true penalized optimizer

Fusing Local and Global Information for One-Step Multi-View Subspace Clustering

Multi-view subspace clustering has drawn significant attention in the pattern recognition and machine learning research community. However, most of the existing multi-view subspace clustering methods are still limited in two aspects. (1) The subspace representation yielded by the self-expression reconstruction model ignores the local structure information of the data. (2) The construction of subspace representation and clustering are used as two individual procedures, which ignores their interactions. To address these problems, we propose a novel multi-view subspace clustering method fusing local and global information for one-step multi-view clustering. Our contribution lies in three aspects. First, we merge the graph learning into the self-expression model to explore the local structure information for constructing the specific subspace representations of different views. Second, we consider the multi-view information fusion by integrating these specific subspace representations into one common subspace representation. Third, we combine the subspace representation learning, multi-view information fusion, and clustering into a joint optimization model to realize the one-step clustering. We also develop an effective optimization algorithm to solve the proposed method. Comprehensive experimental results on nine popular multi-view data sets confirm the effectiveness and superiority of the proposed method by comparing it with many state-of-the-art multi-view clustering methods.This research was funded by National Natural Science Foundation of China under Grant 61903091; Guangdong Basic and Applied Basic Research Foundation (No. 2020A1515010801)

Development of Biclustering Techniques for Gene Expression Data Modeling and Mining

The next-generation sequencing technologies can generate large-scale biological data with higher resolution, better accuracy, and lower technical variation than the arraybased counterparts. RNA sequencing (RNA-Seq) can generate genome-scale gene expression data in biological samples at a given moment, facilitating a better understanding of cell functions at genetic and cellular levels. The abundance of gene expression datasets provides an opportunity to identify genes with similar expression patterns across multiple conditions, i.e., co-expression gene modules (CEMs). Genomescale identification of CEMs can be modeled and solved by biclustering, a twodimensional data mining technique that allows clustering of rows and columns in a gene expression matrix, simultaneously. Compared with traditional clustering that targets global patterns, biclustering can predict local patterns. This unique feature makes biclustering very useful when applied to big gene expression data since genes that participate in a cellular process are only active in specific conditions, thus are usually coexpressed under a subset of all conditions. The combination of biclustering and large-scale gene expression data holds promising potential for condition-specific functional pathway/network analysis. However, existing biclustering tools do not have satisfied performance on high-resolution RNA-Seq data, majorly due to the lack of (i) a consideration of high sparsity of RNA-Seq data, especially for scRNA-Seq data, and (ii) an understanding of the underlying transcriptional regulation signals of the observed gene expression values. QUBIC2, a novel biclustering algorithm, is designed for large-scale bulk RNA-Seq and single-cell RNA-seq (scRNA-Seq) data analysis. Critical novelties of the algorithm include (i) used a truncated model to handle the unreliable quantification of genes with low or moderate expression; (ii) adopted the Gaussian mixture distribution and an information-divergency objective function to capture shared transcriptional regulation signals among a set of genes; (iii) utilized a Dual strategy to expand the core biclusters, aiming to save dropouts from the background; and (iv) developed a statistical framework to evaluate the significances of all the identified biclusters. Method validation on comprehensive data sets suggests that QUBIC2 had superior performance in functional modules detection and cell type classification. The applications of temporal and spatial data demonstrated that QUBIC2 could derive meaningful biological information from scRNA-Seq data. Also presented in this dissertation is QUBICR. This R package is characterized by an 82% average improved efficiency compared to the source C code of QUBIC. It provides a set of comprehensive functions to facilitate biclustering-based biological studies, including the discretization of expression data, query-based biclustering, bicluster expanding, biclusters comparison, heatmap visualization of any identified biclusters, and co-expression networks elucidation. In the end, a systematical summary is provided regarding the primary applications of biclustering for biological data and more advanced applications for biomedical data. It will assist researchers to effectively analyze their big data and generate valuable biological knowledge and novel insights with higher efficiency

Variational methods and its applications to computer vision

Many computer vision applications such as image segmentation can be formulated in a ''variational'' way as energy minimization problems. Unfortunately, the computational task of minimizing these energies is usually difficult as it generally involves non convex functions in a space with thousands of dimensions and often the associated combinatorial problems are NP-hard to solve. Furthermore, they are ill-posed inverse problems and therefore are extremely sensitive to perturbations (e.g. noise). For this reason in order to compute a physically reliable approximation from given noisy data, it is necessary to incorporate into the mathematical model appropriate regularizations that require complex computations. The main aim of this work is to describe variational segmentation methods that are particularly effective for curvilinear structures. Due to their complex geometry, classical regularization techniques cannot be adopted because they lead to the loss of most of low contrasted details. In contrast, the proposed method not only better preserves curvilinear structures, but also reconnects some parts that may have been disconnected by noise. Moreover, it can be easily extensible to graphs and successfully applied to different types of data such as medical imagery (i.e. vessels, hearth coronaries etc), material samples (i.e. concrete) and satellite signals (i.e. streets, rivers etc.). In particular, we will show results and performances about an implementation targeting new generation of High Performance Computing (HPC) architectures where different types of coprocessors cooperate. The involved dataset consists of approximately 200 images of cracks, captured in three different tunnels by a robotic machine designed for the European ROBO-SPECT project.Open Acces