21,350 research outputs found
Model-Based Robustness Testing in Event-B Using Mutation
International audienceRobustness testing aims at finding errors in a system under invalid conditions, such as unexpected inputs. We propose a robust-ness testing approach for Event-B based on specification mutation and model-based testing. We assume that a specification describes the valid inputs of a system. By applying negation rules, we mutate the precondition of events to explore invalid behaviour. Tests are generated from the mutated specification using ProB. ProB has been adapted to efficiently process mutated events. Mutated events are statically checked for satisfiability and enability using constraint satisfaction, to prune the transition search space. This has dramatically improve the performance of test generation. The approach is applied to the Java Card bytecode verifier. Large mutated specifications (containing 921 mutated events) can be easily tackled to ensure a good coverage of the robustness test space
Robustness-Driven Resilience Evaluation of Self-Adaptive Software Systems
An increasingly important requirement for certain classes of software-intensive systems is the ability to self-adapt their structure and behavior at run-time when reacting to changes that may occur to the system, its environment, or its goals. A major challenge related to self-adaptive software systems is the ability to provide assurances of their resilience when facing changes. Since in these systems, the components that act as controllers of a target system incorporate highly complex software, there is the need to analyze the impact that controller failures might have on the services delivered by the system. In this paper, we present a novel approach for evaluating the resilience of self-adaptive software systems by applying robustness testing techniques to the controller to uncover failures that can affect system resilience. The approach for evaluating resilience, which is based on probabilistic model checking, quantifies the probability of satisfaction of system properties when the target system is subject to controller failures. The feasibility of the proposed approach is evaluated in the context of an industrial middleware system used to monitor and manage highly populated networks of devices, which was implemented using the Rainbow framework for architecture-based self-adaptation
Model-Based Security Testing
Security testing aims at validating software system requirements related to
security properties like confidentiality, integrity, authentication,
authorization, availability, and non-repudiation. Although security testing
techniques are available for many years, there has been little approaches that
allow for specification of test cases at a higher level of abstraction, for
enabling guidance on test identification and specification as well as for
automated test generation.
Model-based security testing (MBST) is a relatively new field and especially
dedicated to the systematic and efficient specification and documentation of
security test objectives, security test cases and test suites, as well as to
their automated or semi-automated generation. In particular, the combination of
security modelling and test generation approaches is still a challenge in
research and of high interest for industrial applications. MBST includes e.g.
security functional testing, model-based fuzzing, risk- and threat-oriented
testing, and the usage of security test patterns. This paper provides a survey
on MBST techniques and the related models as well as samples of new methods and
tools that are under development in the European ITEA2-project DIAMONDS.Comment: In Proceedings MBT 2012, arXiv:1202.582
Integrating genealogical and dynamical modelling to infer escape and reversion rates in HIV epitopes
The rates of escape and reversion in response to selection pressure arising
from the host immune system, notably the cytotoxic T-lymphocyte (CTL) response,
are key factors determining the evolution of HIV. Existing methods for
estimating these parameters from cross-sectional population data using ordinary
differential equations (ODE) ignore information about the genealogy of sampled
HIV sequences, which has the potential to cause systematic bias and
over-estimate certainty. Here, we describe an integrated approach, validated
through extensive simulations, which combines genealogical inference and
epidemiological modelling, to estimate rates of CTL escape and reversion in HIV
epitopes. We show that there is substantial uncertainty about rates of viral
escape and reversion from cross-sectional data, which arises from the inherent
stochasticity in the evolutionary process. By application to empirical data, we
find that point estimates of rates from a previously published ODE model and
the integrated approach presented here are often similar, but can also differ
several-fold depending on the structure of the genealogy. The model-based
approach we apply provides a framework for the statistical analysis of escape
and reversion in population data and highlights the need for longitudinal and
denser cross-sectional sampling to enable accurate estimate of these key
parameters
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data
Background. A large number of algorithms is being developed to reconstruct
evolutionary models of individual tumours from genome sequencing data. Most
methods can analyze multiple samples collected either through bulk multi-region
sequencing experiments or the sequencing of individual cancer cells. However,
rarely the same method can support both data types.
Results. We introduce TRaIT, a computational framework to infer mutational
graphs that model the accumulation of multiple types of somatic alterations
driving tumour evolution. Compared to other tools, TRaIT supports multi-region
and single-cell sequencing data within the same statistical framework, and
delivers expressive models that capture many complex evolutionary phenomena.
TRaIT improves accuracy, robustness to data-specific errors and computational
complexity compared to competing methods.
Conclusions. We show that the application of TRaIT to single-cell and
multi-region cancer datasets can produce accurate and reliable models of
single-tumour evolution, quantify the extent of intra-tumour heterogeneity and
generate new testable experimental hypotheses
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