High-Performance Cloud Computing: A View of Scientific Applications

Scientific computing often requires the availability of a massive number of computers for performing large scale experiments. Traditionally, these needs have been addressed by using high-performance computing solutions and installed facilities such as clusters and super computers, which are difficult to setup, maintain, and operate. Cloud computing provides scientists with a completely new model of utilizing the computing infrastructure. Compute resources, storage resources, as well as applications, can be dynamically provisioned (and integrated within the existing infrastructure) on a pay per use basis. These resources can be released when they are no more needed. Such services are often offered within the context of a Service Level Agreement (SLA), which ensure the desired Quality of Service (QoS). Aneka, an enterprise Cloud computing solution, harnesses the power of compute resources by relying on private and public Clouds and delivers to users the desired QoS. Its flexible and service based infrastructure supports multiple programming paradigms that make Aneka address a variety of different scenarios: from finance applications to computational science. As examples of scientific computing in the Cloud, we present a preliminary case study on using Aneka for the classification of gene expression data and the execution of fMRI brain imaging workflow.Comment: 13 pages, 9 figures, conference pape

MorphoSys: efficient colocation of QoS-constrained workloads in the cloud

In hosting environments such as IaaS clouds, desirable application performance is usually guaranteed through the use of Service Level Agreements (SLAs), which specify minimal fractions of resource capacities that must be allocated for unencumbered use for proper operation. Arbitrary colocation of applications with different SLAs on a single host may result in inefficient utilization of the host’s resources. In this paper, we propose that periodic resource allocation and consumption models -- often used to characterize real-time workloads -- be used for a more granular expression of SLAs. Our proposed SLA model has the salient feature that it exposes flexibilities that enable the infrastructure provider to safely transform SLAs from one form to another for the purpose of achieving more efficient colocation. Towards that goal, we present MORPHOSYS: a framework for a service that allows the manipulation of SLAs to enable efficient colocation of arbitrary workloads in a dynamic setting. We present results from extensive trace-driven simulations of colocated Video-on-Demand servers in a cloud setting. These results show that potentially-significant reduction in wasted resources (by as much as 60%) are possible using MORPHOSYS.National Science Foundation (0720604, 0735974, 0820138, 0952145, 1012798

Checkpointing as a Service in Heterogeneous Cloud Environments

A non-invasive, cloud-agnostic approach is demonstrated for extending existing cloud platforms to include checkpoint-restart capability. Most cloud platforms currently rely on each application to provide its own fault tolerance. A uniform mechanism within the cloud itself serves two purposes: (a) direct support for long-running jobs, which would otherwise require a custom fault-tolerant mechanism for each application; and (b) the administrative capability to manage an over-subscribed cloud by temporarily swapping out jobs when higher priority jobs arrive. An advantage of this uniform approach is that it also supports parallel and distributed computations, over both TCP and InfiniBand, thus allowing traditional HPC applications to take advantage of an existing cloud infrastructure. Additionally, an integrated health-monitoring mechanism detects when long-running jobs either fail or incur exceptionally low performance, perhaps due to resource starvation, and proactively suspends the job. The cloud-agnostic feature is demonstrated by applying the implementation to two very different cloud platforms: Snooze and OpenStack. The use of a cloud-agnostic architecture also enables, for the first time, migration of applications from one cloud platform to another.Comment: 20 pages, 11 figures, appears in CCGrid, 201