QUANTIFYING GRASSLAND NON-PHOTOSYNTHETIC VEGETATION BIOMASS USING REMOTE SENSING DATA

Non-photosynthetic vegetation (NPV) refers to vegetation that cannot perform a photosynthetic function. NPV, including standing dead vegetation and surface plant litter, plays a vital role in maintaining ecosystem function through controlling carbon, water and nutrient uptake as well as natural fire frequency and intensity in diverse ecosystems such as forest, savannah, wetland, cropland, and grassland. Due to its ecological importance, NPV has been selected as an indicator of grassland ecosystem health by the Alberta Public Lands Administration in Canada. The ecological importance of NPV has driven considerable research on quantifying NPV biomass with remote sensing approaches in various ecosystems. Although remote images, especially hyperspectral images, have demonstrated potential for use in NPV estimation, there has not been a way to quantify NPV biomass in semiarid grasslands where NPV biomass is affected by green vegetation (PV), bare soil and biological soil crust (BSC). The purpose of this research is to find a solution to quantitatively estimate NPV biomass with remote sensing approaches in semiarid mixed grasslands. Research was conducted in Grasslands National Park (GNP), a parcel of semiarid mixed prairie grassland in southern Saskatchewan, Canada. Multispectral images, including newly operational Landsat 8 Operational Land Imager (OLI) and Sentinel-2A Multi-spectral Instrument (MSIs) images and fine Quad-pol Radarsat-2 images were used for estimating NPV biomass in early, middle, and peak growing seasons via a simple linear regression approach. The results indicate that multispectral Landsat 8 OLI and Sentinel-2A MSIs have potential to quantify NPV biomass in peak and early senescence growing seasons. Radarsat-2 can also provide a solution for NPV biomass estimation. However, the performance of Radarsat-2 images is greatly affected by incidence angle of the image acquisition. This research filled a critical gap in applying remote sensing approaches to quantify NPV biomass in grassland ecosystems. NPV biomass estimates and approaches for estimating NPV biomass will contribute to grassland ecosystem health assessment (EHA) and natural resource (i.e. land, soil, water, plant, and animal) management

Assessing the role of EO in biodiversity monitoring: options for integrating in-situ observations with EO within the context of the EBONE concept

The European Biodiversity Observation Network (EBONE) is a European contribution on terrestrial monitoring to GEO BON, the Group on Earth Observations Biodiversity Observation Network. EBONE’s aims are to develop a system of biodiversity observation at regional, national and European levels by assessing existing approaches in terms of their validity and applicability starting in Europe, then expanding to regions in Africa. The objective of EBONE is to deliver: 1. A sound scientific basis for the production of statistical estimates of stock and change of key indicators; 2. The development of a system for estimating past changes and forecasting and testing policy options and management strategies for threatened ecosystems and species; 3. A proposal for a cost-effective biodiversity monitoring system. There is a consensus that Earth Observation (EO) has a role to play in monitoring biodiversity. With its capacity to observe detailed spatial patterns and variability across large areas at regular intervals, our instinct suggests that EO could deliver the type of spatial and temporal coverage that is beyond reach with in-situ efforts. Furthermore, when considering the emerging networks of in-situ observations, the prospect of enhancing the quality of the information whilst reducing cost through integration is compelling. This report gives a realistic assessment of the role of EO in biodiversity monitoring and the options for integrating in-situ observations with EO within the context of the EBONE concept (cfr. EBONE-ID1.4). The assessment is mainly based on a set of targeted pilot studies. Building on this assessment, the report then presents a series of recommendations on the best options for using EO in an effective, consistent and sustainable biodiversity monitoring scheme. The issues that we faced were many: 1. Integration can be interpreted in different ways. One possible interpretation is: the combined use of independent data sets to deliver a different but improved data set; another is: the use of one data set to complement another dataset. 2. The targeted improvement will vary with stakeholder group: some will seek for more efficiency, others for more reliable estimates (accuracy and/or precision); others for more detail in space and/or time or more of everything. 3. Integration requires a link between the datasets (EO and in-situ). The strength of the link between reflected electromagnetic radiation and the habitats and their biodiversity observed in-situ is function of many variables, for example: the spatial scale of the observations; timing of the observations; the adopted nomenclature for classification; the complexity of the landscape in terms of composition, spatial structure and the physical environment; the habitat and land cover types under consideration. 4. The type of the EO data available varies (function of e.g. budget, size and location of region, cloudiness, national and/or international investment in airborne campaigns or space technology) which determines its capability to deliver the required output. EO and in-situ could be combined in different ways, depending on the type of integration we wanted to achieve and the targeted improvement. We aimed for an improvement in accuracy (i.e. the reduction in error of our indicator estimate calculated for an environmental zone). Furthermore, EO would also provide the spatial patterns for correlated in-situ data. EBONE in its initial development, focused on three main indicators covering: (i) the extent and change of habitats of European interest in the context of a general habitat assessment; (ii) abundance and distribution of selected species (birds, butterflies and plants); and (iii) fragmentation of natural and semi-natural areas. For habitat extent, we decided that it did not matter how in-situ was integrated with EO as long as we could demonstrate that acceptable accuracies could be achieved and the precision could consistently be improved. The nomenclature used to map habitats in-situ was the General Habitat Classification. We considered the following options where the EO and in-situ play different roles: using in-situ samples to re-calibrate a habitat map independently derived from EO; improving the accuracy of in-situ sampled habitat statistics, by post-stratification with correlated EO data; and using in-situ samples to train the classification of EO data into habitat types where the EO data delivers full coverage or a larger number of samples. For some of the above cases we also considered the impact that the sampling strategy employed to deliver the samples would have on the accuracy and precision achieved. Restricted access to European wide species data prevented work on the indicator ‘abundance and distribution of species’. With respect to the indicator ‘fragmentation’, we investigated ways of delivering EO derived measures of habitat patterns that are meaningful to sampled in-situ observations

Remote sensing tools for monitoring grassland plant leaf traits and biodiversity

Rocchini, Duccio1This project has received funding from the European Union’s Horizon 2020 Research and Innovation Program under the Marie Skłodowska-Curie Grant No. 721995 (project Trustee).openGrasslands are one of the most important ecosystems on Earth, covering approximately onethird of the Earth’s surface. Grassland biodiversity is important as many services provided by such ecosystems are crucial for the human economy and well-being. Given the importance of grasslands ecosystems, in recent years research has been carried out on the potential to monitor them with novel remote sensing techniques. Improved detectors technology and novel sensors providing finescale hyperspectral imagery have been enabling new methods to monitor plant traits (PTs) and biodiversity. The aims of the work were to study different approaches to monitor key grassland PTs such as Leaf Area Index (LAI) and biodiversity-related traits. The thesis consists of 3 parts: 1) Evaluating the performance of remote sensing methods to estimate LAI in grassland ecosystems, 2) Estimating plant biodiversity by using the optical diversity approach in grassland ecosystems, and 3) Investigating the relationship between PTs variability with alpha and beta diversity for the applicability of the optical diversity approach in a subalpine grassland of the Italian Alps To evaluate the performance of remote sensing methods to estimate LAI, temporal and spatial observations of hyperspectral reflectance and LAI were analyzed at a grassland site in Monte Bondone, Italy (IT-MBo). In 2018, ground temporal observations of hyperspectral reflectance and LAI were carried out at a grassland site in Neustift, Austria (AT-NEU). To estimate biodiversity, in 2018 and 2019 a floristics survey was conducted to determine species composition and hyperspectral data were acquired at two grassland sites: IT-MBo and University of Padova’s Experimental Farm, Legnaro, Padua, Italy (IT-PD) respectively. Furthermore, in 2018, biochemistry analysis of the biomass samples collected from the grassland site IT-MBo was carried out to determine the foliar biochemical PTs variability. The results of the thesis demonstrated that the grassland spectral response across different spectral regions (Visible: VIS, red-edge: RE, Near-infrared: NIR) showed to be both site-specific and scale-dependent. In the first part of the thesis, the performance of spectral vegetation indices (SVIs) based on visible, red-edge (RE), and NIR bands alongside SVIs solely based or NIRshoulder bands (wavelengths 750 - 900 nm) was evaluated. A strong correlation (R2 > 0.8) was observed between grassland LAI and both RE and NIR-shoulder SVIs on a temporal basis, but not on a spatial basis. Using the PROSAIL Radiative Transfer Model (RTM), it was demonstrated that grassland structural heterogeneity strongly affects the ability to retrieve LAI, with high uncertainties due to structural and biochemical PTs co-variation. In the second part, the applicability of the spectral variability hypothesis (SVH) was questioned and highlighted the challenges to use high-resolution hyperspectral images to estimate biodiversity in complex grassland ecosystems. It was reported that the relationship between biodiversity (Shannon, Richness, Simpson, and Evenness) and optical diversity metrics (Coefficient of variation (CV) and Standard deviation (SD)) is not consistent across plant communities. The results of the second part suggested that biodiversity in terms of species richness could be estimated by optical diversity metrics with an R2 = 0.4 at the IT-PD site where the grassland plots were artificially established and are showing a lower structure and complexity from the natural grassland plant communities. On the other hand, in the natural ecosystems at IT-MBo, it was more difficult to estimate biodiversity indices, probably due to structural and biochemical PTs co-variation. The 18 effects of canopy non-vegetative elements (flowers and dead material), shadow pixels, and overexposed pixels on the relationship between optical diversity metrics and biodiversity indices were highlighted. In the third part, we examined the relationship between PTs variability (at both local and community scales, measured by standard deviation and by the Euclidean distances of the biochemical and biophysical PTs respectively) and taxonomic diversity (both α-diversity and βdiversity, measured by Shannon’s index and by Jaccard dissimilarity index of the species, families, and functional groups percent cover respectively) in Monte Bondone, Trentino province, Italy. The results of the study showed that the PTs variability metrics at alpha scale were not correlated with α-diversity. However, the results at the community scale (β-diversity) showed that some of the investigated biochemical and biophysical PTs variations metrics were associated with β-diversity. The SVH approach was also tested to estimate β-diversity and we found that spectral diversity calculated by spectral angular mapper (SAM) showed to be a better proxy of biodiversity in the same ecosystem where the spectral diversity failed to estimate alpha diversity, this leading to the conclusion that the link between functional and species diversity may be an indicator of the applicability of optical sampling methods to estimate biodiversity. The findings of the thesis highlighted that grassland structural heterogeneity strongly affects the ability to retrieve both LAI and biodiversity, with high uncertainties due to structural and biochemical PTs co-variation at complex grassland ecosystems. In this context, the uncertainties of satellite-based products (e.g., LAI) in monitoring grassland canopies characterized by either spatially or temporally varying structure need to be carefully taken into account. The results of the study highlighted that the poor performance of optical diversity proxies in estimating biodiversity in structurally heterogeneous grasslands might be due to the complex relationships between functional diversity and biodiversity, rather than the impossibility to detect functional diversity with spectral proxiesopenImran, H.A

Multi-temporal assessment of diversity and condition in UK semi-natural grasslands using optical reflectance

With 40% of the world’s plants estimated to be under threat of extinction and ever lowering levels of ecological intactness of biological systems, the requirement to effectively monitor plant species and diversity has never been more pressing. Globally, natural, and semi-natural grassland ecosystems are at particular risk of degradation and conversion. Semi-natural grasslands in the UK currently make up about 1-2% of the permanent lowland grassland cover. Once degraded due to agricultural additions or inappropriate management, they can be difficult and costly to restore. As these systems display high levels of plant and invertebrate diversity, there is a need to safeguard their decline. However, there are currently significant challenges to providing the data needed to assess the condition of these systems. Remote sensing could contribute by providing information on herbaceous plant diversity and vegetation state across a wide range of spatial scales and time. Optical traits are a subset of plant traits that are detectable using reflectance data from leaf to canopy scales, dependent on the configuration of the sensor employed and can be linked to taxonomic diversity and condition of vegetation. Very high spatial resolution hyperspectral imaging technologies are, for the first time, enabling in-situ grassland plant phenotyping at the leaf, individual and high-resolution canopy scale. Analyses of these spectra have demonstrated promising results in application of mapping of taxonomic units and diversity metrics. However there is little evidence of the temporal stability of these observations. At the landscape scale, openly available, higher spatial resolution satellite data is also enabling examination of smaller field parcels, which are typical of UK fragmented landscapes. In this context, spectral time-series have the potential to be used to predict the condition of vegetation communities of conservation interest. In this thesis, the use of optical remote sensing data to further our understanding of semi-natural grasslands and to safeguard their decline, is examined, with a particular focus on the exploitation of multi-temporal sampling. Firstly, spectral variation in space, as a surrogate measure for species or community type diversity (also known as the spectral variation hypothesis), is assessed via a meta-analysis of existing studies. The results of the synthesis reveal some promise for the approach, but a large amount of variation between study outcomes is observed, suggesting that methodological approaches are important in the effectiveness of the proxy. Secondly, spectral data is collected alongside botanical and phenological diversity data at high spatial resolution over a growing season to test the stability of the spectral variation hypothesis over time. The results of these experiments show that the ability to detect biodiversity using this method is seasonally, and possibly, site dependent. Next, the suitability of hyperspectral leaf reflectance for distinguishing 17 herbaceous species growing within a calcareous grassland is examined. The application of machine learning classification models to multi-temporal leaf spectra show that although species are distinguishable at most sampling times within the year, the transferability of these models is very limited between sampling dates. Finally satellite time-series of vegetation indices are used to predict favourable or unfavourable vegetation condition criteria in calcareous fields across two years. A number of indices were successful in distinguishing between the different condition criteria but there was variation in results found between the two years sampled, due to differences in intra-annual vegetation phenology. Overall the results of this thesis, show promise for remote sensing of grassland biodiversity and condition. Both high spatial resolution hyperspectral data, as well as coarser resolution multi-spectral data sets, can be useful in evaluation of these systems. However, the dynamic nature of leaves and canopies over time, will require a multi-temporal approach to model building, which should be an integral part of developing these methods in the future

Understanding the spatial relations of wetland plant functional traits and environmental gradients incorporating remote sensing.

Doctoral Degree. University of KwaZulu-Natal, Pietermaritzburg.Abstract available in PDF

Assessing plant trait diversity as an indicators of species α and β-diversity in a subalpine grassland of the Italian Alps

As the need for ecosystem biodiversity assessment increases within the climatecrisis framework, more and more studies using spectral variation hypothesis(SVH) are proposed to assess biodiversity at various scales. The SVH impliesoptical diversity (also called spectral diversity) is driven by light absorptiondynamics associated with plant traits (PTs) variability (which is an indicator offunctional diversity) which is, in turn, determined by biodiversity. In this study,we examined the relationship between PTs variability, optical diversity andα-andβ-diversity at different taxonomic ranks at the Monte Bondone grasslands,Trentino province, Italy. The results of the study showed that the PTs variabil-ity, at theαscale, was not correlated with biodiversity. On the other hand, theresults observed at the community scale (β-diversity) showed that the variationof some of the investigated biochemical and biophysical PTs was associatedwith theβ-diversity. We used the Mantel test to analyse the relationshipbetween the PTs variability and speciesβ-diversity. The results showed a corre-lation coefficient of up to 0.50 between PTs variability and speciesβ-diversity.For higher taxonomic ranks such as family and functional groups, a slightlyhigher Spearman’s correlation coefficient of up to 0.64 and 0.61 was observed,respectively. The SVH approach was also tested to estimateβ-diversity and wefound that spectral diversity calculated by Spectral Angle Mapper showed to bea better proxy of biodiversity in the same ecosystem where the spectral diversityapproach failed to estimateα-diversity. These findings suggest that optical andPTs diversity approaches can be used to predict species diversity in the grass-lands ecosystem where the species turnover is high

Evaluating Vascular Plant Composition and Species Richness on Horn Island, Mississippi, Using Passive and Active Remote Sensing in Conjunction with Ground Based Measurements

Barrier island vegetation is subjected to chronic abiotic stressors combined with periodic storm events that favor species adapted to harsh environments. These islands are the first landforms to be affected by changes in coastal subsidence and sea-level rise. Evaluating changes in vegetation is important for understanding the impact of global climate change on coastal environments. This study assesses vegetation composition and plant species richness on Horn Island, Mississippi using ground data in conjunction with remotely sensed spectral and LIDAR data. The goals of this research are to: 1) classify and map vegetation composition on Horn Island using hyperspectral and LIDAR data, 2) evaluate changes in vegetation composition through comparison with a vegetation study and classification map from 1979, 3) determine the extent to which vascular plant species richness might be estimated using remotely sensed spectral reflectance indices and spatial variability within these indices, and 4) utilize the vertical distribution of airborne multiple-return LIDAR data to evaluate vascular plant species richness. The vegetation composition of habitat-types on Horn Island can be identified by indicator species that are consistent both over time and among other barrier islands. Additionally, combining airborne hyperspectral and LIDAR data improved the overall classification accuracy of habitats. Although only broad comparisons in vegetation changes could be made between this study and previous maps, these changes were linked with geomorphological changes. In simple linear regressions, various reflectance- and LIDAR-indices correlated significantly (p \u3c 0.05) with richness when habitat-types were considered individually. Regressions of richness with indices derived from within-transect means or spatial variability in reflectance, reflectance band ratios, as well as vertical distribution descriptors and height percentiles from LIDAR data produced estimation errors of 0.4-2.5 species per transect. Best-fit indices from hyperspectral data indicate spectral bands in the near- and mid-infrared spectra are most important in the estimation of plant species richness while LIDAR indices indicate the importance of vegetation height and structural complexity in estimating plant species richness. The capability of utilizing remotely sensed data to classify vegetation composition and estimate species richness provides a promising means of assessing and monitoring vegetation on barrier islands

Satellite-based monitoring of pasture degradation on the Tibetan Plateau: A multi-scale approach

The Tibetan Plateau has been entitled Third-Pole-Environment'' because of its outstanding importance for the global climate and the hydrological system of East and Southeast Asia. Its climatological and hydrological influences are strongly affected by the local vegetation which is supposed to be subject to ongoing degradation. The degradation of the Tibetan pastures was investigated on the local scale by numerous studies. However, because methods and scales substantially differed among the previous studies, the overall pattern of degradation on the Tibetan Plateau is hitherto unknown. Consequently, the aims of this thesis are to monitor recent changes in the grassland degradation on the Tibetan Plateau and to detect the underlying driving forces of the observed changes. Therefore, a comprehensive remote sensing based approach is developed. The new approach consists of three parts and incorporates different spatial and temporal scales: (i) the development and testing of an indicator system for pasture degradation on the local scale, (ii) the development of a MODIS-based product usable for degradation monitoring from the local to the plateau scale, and (iii) the application of the new product to delineate recent changes in the degradation status of the pastures on the Tibetan Plateau. The first part of the new approach comprised the test of the suitability of a new two-indicator system and its transferability to spaceborne data. The indicators were land-cover fractions (e.g.,~green vegetation, bare soil) derived from linear spectral unmixing and chlorophyll content. The latter was incorporated as a proxy for nutrient and water availability. It was estimated combining hyperspectral vegetation indices as predictors in partial least squares regression. The indicator system was established and tested on the local scale using a transect design and textit{in situ} measured data. The promising results revealed clear spatial patterns attributed to degradation, indicating that the combination of vegetation cover and chlorophyll content is a suitable indicator system for the detection of pasture degradation on local scales on the Tibetan Plateau. To delineate patterns of degradation changes on the plateau scale, the green plant coverage of the Tibetan pastures was derived in the second part. Therefore, an upscaling approach was developed. It is based on satellite data from high spatial resolution sensors on the local scale (WorldView-type) via medium resolution data (Landsat) to low resolution data on the plateau scale (MODIS). The different spatial resolutions involved in the methodology were incorporated to enable the cross-validation of the estimations in the new product against field observations (over 600 plots across the entire Tibetan Plateau). Four methods (linear spectral unmixing, spectral angle mapper, partial least squares regression, and support vector machine regression) were tested on their predictive performance for the estimation of plant cover and the method with the highest accuracy (support vector machine regression) was applied to 14 years of MODIS data to generate a new vegetation coverage product. In the third part, the changes in vegetation cover between the years 2000 and 2013 and their driving forces were investigated by comparing the trends in the new vegetation coverage product against climate variables (precipitation from tropical rainfall measuring mission and 2 m air temperature from ERA-Interim reanalysis data) on the entire Tibetan Plateau. Large areas in southern Qinghai were identified where vegetation cover increased as a result of positive precipitation trends. Thus, degradation did not proceed in these regions. Contrasting with this, large areas in the central and western parts of the Tibetan Autonomous Region were subject to an ongoing degradation. This degradation can be attributed to the coincidence of rising temperatures and anthropogenic induced increases in livestock numbers as a consequence of local land-use change. In those areas, the ongoing degradation influenced local precipitation patterns because sensible heat fluxes were accelerated above degraded pastures. In combination with advected moist air masses at higher atmospheric levels, the accelerated heat fluxes led to an intensification of local convective rainfall. The ongoing degradation detected by the new remote sensing approach in this thesis is alarming. The affected regions encompass the river systems of the Indus and Brahmaputra Rivers, where the ongoing degradation negatively affects the water storage capacities of the soils and enhances erosion. In combination with the feed-back mechanisms between plant coverage and the changed precipitation on the Tibetan Plateau, the reduced water storage capacity will exacerbate runoff extremes in the middle and lower reaches of those important river systems