Persistent Homology Tools for Image Analysis

Topological Data Analysis (TDA) is a new field of mathematics emerged rapidly since the first decade of the century from various works of algebraic topology and geometry. The goal of TDA and its main tool of persistent homology (PH) is to provide topological insight into complex and high dimensional datasets. We take this premise onboard to get more topological insight from digital image analysis and quantify tiny low-level distortion that are undetectable except possibly by highly trained persons. Such image distortion could be caused intentionally (e.g. by morphing and steganography) or naturally in abnormal human tissue/organ scan images as a result of onset of cancer or other diseases. The main objective of this thesis is to design new image analysis tools based on persistent homological invariants representing simplicial complexes on sets of pixel landmarks over a sequence of distance resolutions. We first start by proposing innovative automatic techniques to select image pixel landmarks to build a variety of simplicial topologies from a single image. Effectiveness of each image landmark selection demonstrated by testing on different image tampering problems such as morphed face detection, steganalysis and breast tumour detection. Vietoris-Rips simplicial complexes constructed based on the image landmarks at an increasing distance threshold and topological (homological) features computed at each threshold and summarized in a form known as persistent barcodes. We vectorise the space of persistent barcodes using a technique known as persistent binning where we demonstrated the strength of it for various image analysis purposes. Different machine learning approaches are adopted to develop automatic detection of tiny texture distortion in many image analysis applications. Homological invariants used in this thesis are the 0 and 1 dimensional Betti numbers. We developed an innovative approach to design persistent homology (PH) based algorithms for automatic detection of the above described types of image distortion. In particular, we developed the first PH-detector of morphing attacks on passport face biometric images. We shall demonstrate significant accuracy of 2 such morph detection algorithms with 4 types of automatically extracted image landmarks: Local Binary patterns (LBP), 8-neighbour super-pixels (8NSP), Radial-LBP (R-LBP) and centre-symmetric LBP (CS-LBP). Using any of these techniques yields several persistent barcodes that summarise persistent topological features that help gaining insights into complex hidden structures not amenable by other image analysis methods. We shall also demonstrate significant success of a similarly developed PH-based universal steganalysis tool capable for the detection of secret messages hidden inside digital images. We also argue through a pilot study that building PH records from digital images can differentiate breast malignant tumours from benign tumours using digital mammographic images. The research presented in this thesis creates new opportunities to build real applications based on TDA and demonstrate many research challenges in a variety of image processing/analysis tasks. For example, we describe a TDA-based exemplar image inpainting technique (TEBI), superior to existing exemplar algorithm, for the reconstruction of missing image regions

Computational intelligence approaches to robotics, automation, and control [Volume guest editors]

No abstract available

3-D Face Recognition Using Geodesic-Map Representation and Statistical Shape Modelling

3-D face recognition research has received significant attention in the past two decades because of the rapid development in imaging technology and ever increasing security demand of modern society. One of its challenges is to cope with non-rigid deformation among faces, which is often caused by the changes of appearance and facial expression. Popular solutions to deal with this problem are to detect the deformable parts of the face and exclude them, or to represent a face in terms of sparse signature points, curves or patterns that are invariant to deformation. Such approaches, however, may lead to loss of information which is important for classification. In this paper, we propose a new geodesic-map representation with statistical shape modelling for handling the non-rigid deformation challenge in face recognition. The proposed representation captures all geometrical information from the entire 3-D face and provides a compact and expression-free map that preserves intrinsic geometrical information. As a result, the search for dense points correspondence in the face recognition task can be speeded up by using a simple image-based method instead of time-consuming, recursive closest distance search in 3-D space. An experimental investigation was conducted on 3-D face scans using publicly available databases and compared with the benchmark approaches. The experimental results demonstrate that the proposed scheme provides a highly competitive new solution for 3-D face recognition

Subspace Representations for Robust Face and Facial Expression Recognition

Analyzing human faces and modeling their variations have always been of interest to the computer vision community. Face analysis based on 2D intensity images is a challenging problem, complicated by variations in pose, lighting, blur, and non-rigid facial deformations due to facial expressions. Among the different sources of variation, facial expressions are of interest as important channels of non-verbal communication. Facial expression analysis is also affected by changes in view-point and inter-subject variations in performing different expressions. This dissertation makes an attempt to address some of the challenges involved in developing robust algorithms for face and facial expression recognition by exploiting the idea of proper subspace representations for data. Variations in the visual appearance of an object mostly arise due to changes in illumination and pose. So we first present a video-based sequential algorithm for estimating the face albedo as an illumination-insensitive signature for face recognition. We show that by knowing/estimating the pose of the face at each frame of a sequence, the albedo can be efficiently estimated using a Kalman filter. Then we extend this to the case of unknown pose by simultaneously tracking the pose as well as updating the albedo through an efficient Bayesian inference method performed using a Rao-Blackwellized particle filter. Since understanding the effects of blur, especially motion blur, is an important problem in unconstrained visual analysis, we then propose a blur-robust recognition algorithm for faces with spatially varying blur. We model a blurred face as a weighted average of geometrically transformed instances of its clean face. We then build a matrix, for each gallery face, whose column space spans the space of all the motion blurred images obtained from the clean face. This matrix representation is then used to define a proper objective function and perform blur-robust face recognition. To develop robust and generalizable models for expression analysis one needs to break the dependence of the models on the choice of the coordinate frame of the camera. To this end, we build models for expressions on the affine shape-space (Grassmann manifold), as an approximation to the projective shape-space, by using a Riemannian interpretation of deformations that facial expressions cause on different parts of the face. This representation enables us to perform various expression analysis and recognition algorithms without the need for pose normalization as a preprocessing step. There is a large degree of inter-subject variations in performing various expressions. This poses an important challenge on developing robust facial expression recognition algorithms. To address this challenge, we propose a dictionary-based approach for facial expression analysis by decomposing expressions in terms of action units (AUs). First, we construct an AU-dictionary using domain experts' knowledge of AUs. To incorporate the high-level knowledge regarding expression decomposition and AUs, we then perform structure-preserving sparse coding by imposing two layers of grouping over AU-dictionary atoms as well as over the test image matrix columns. We use the computed sparse code matrix for each expressive face to perform expression decomposition and recognition. Most of the existing methods for the recognition of faces and expressions consider either the expression-invariant face recognition problem or the identity-independent facial expression recognition problem. We propose joint face and facial expression recognition using a dictionary-based component separation algorithm (DCS). In this approach, the given expressive face is viewed as a superposition of a neutral face component with a facial expression component, which is sparse with respect to the whole image. This assumption leads to a dictionary-based component separation algorithm, which benefits from the idea of sparsity and morphological diversity. The DCS algorithm uses the data-driven dictionaries to decompose an expressive test face into its constituent components. The sparse codes we obtain as a result of this decomposition are then used for joint face and expression recognition

Artificial Intelligence Tools for Facial Expression Analysis.

Inner emotions show visibly upon the human face and are understood as a basic guide to an individual’s inner world. It is, therefore, possible to determine a person’s attitudes and the effects of others’ behaviour on their deeper feelings through examining facial expressions. In real world applications, machines that interact with people need strong facial expression recognition. This recognition is seen to hold advantages for varied applications in affective computing, advanced human-computer interaction, security, stress and depression analysis, robotic systems, and machine learning. This thesis starts by proposing a benchmark of dynamic versus static methods for facial Action Unit (AU) detection. AU activation is a set of local individual facial muscle parts that occur in unison constituting a natural facial expression event. Detecting AUs automatically can provide explicit benefits since it considers both static and dynamic facial features. For this research, AU occurrence activation detection was conducted by extracting features (static and dynamic) of both nominal hand-crafted and deep learning representation from each static image of a video. This confirmed the superior ability of a pretrained model that leaps in performance. Next, temporal modelling was investigated to detect the underlying temporal variation phases using supervised and unsupervised methods from dynamic sequences. During these processes, the importance of stacking dynamic on top of static was discovered in encoding deep features for learning temporal information when combining the spatial and temporal schemes simultaneously. Also, this study found that fusing both temporal and temporal features will give more long term temporal pattern information. Moreover, we hypothesised that using an unsupervised method would enable the leaching of invariant information from dynamic textures. Recently, fresh cutting-edge developments have been created by approaches based on Generative Adversarial Networks (GANs). In the second section of this thesis, we propose a model based on the adoption of an unsupervised DCGAN for the facial features’ extraction and classification to achieve the following: the creation of facial expression images under different arbitrary poses (frontal, multi-view, and in the wild), and the recognition of emotion categories and AUs, in an attempt to resolve the problem of recognising the static seven classes of emotion in the wild. Thorough experimentation with the proposed cross-database performance demonstrates that this approach can improve the generalization results. Additionally, we showed that the features learnt by the DCGAN process are poorly suited to encoding facial expressions when observed under multiple views, or when trained from a limited number of positive examples. Finally, this research focuses on disentangling identity from expression for facial expression recognition. A novel technique was implemented for emotion recognition from a single monocular image. A large-scale dataset (Face vid) was created from facial image videos which were rich in variations and distribution of facial dynamics, appearance, identities, expressions, and 3D poses. This dataset was used to train a DCNN (ResNet) to regress the expression parameters from a 3D Morphable Model jointly with a back-end classifier

Robust signatures for 3D face registration and recognition

PhDBiometric authentication through face recognition has been an active area of research for the last few decades, motivated by its application-driven demand. The popularity of face recognition, compared to other biometric methods, is largely due to its minimum requirement of subject co-operation, relative ease of data capture and similarity to the natural way humans distinguish each other. 3D face recognition has recently received particular interest since three-dimensional face scans eliminate or reduce important limitations of 2D face images, such as illumination changes and pose variations. In fact, three-dimensional face scans are usually captured by scanners through the use of a constant structured-light source, making them invariant to environmental changes in illumination. Moreover, a single 3D scan also captures the entire face structure and allows for accurate pose normalisation. However, one of the biggest challenges that still remain in three-dimensional face scans is the sensitivity to large local deformations due to, for example, facial expressions. Due to the nature of the data, deformations bring about large changes in the 3D geometry of the scan. In addition to this, 3D scans are also characterised by noise and artefacts such as spikes and holes, which are uncommon with 2D images and requires a pre-processing stage that is speci c to the scanner used to capture the data. The aim of this thesis is to devise a face signature that is compact in size and overcomes the above mentioned limitations. We investigate the use of facial regions and landmarks towards a robust and compact face signature, and we study, implement and validate a region-based and a landmark-based face signature. Combinations of regions and landmarks are evaluated for their robustness to pose and expressions, while the matching scheme is evaluated for its robustness to noise and data artefacts

Three Dimensional Nonlinear Statistical Modeling Framework for Morphological Analysis

This dissertation describes a novel three-dimensional (3D) morphometric analysis framework for building statistical shape models and identifying shape differences between populations. This research generalizes the use of anatomical atlases on more complex anatomy as in case of irregular, flat bones, and bones with deformity and irregular bone growth. The foundations for this framework are: 1) Anatomical atlases which allow the creation of homologues anatomical models across populations; 2) Statistical representation for output models in a compact form to capture both local and global shape variation across populations; 3) Shape Analysis using automated 3D landmarking and surface matching. The proposed framework has various applications in clinical, forensic and physical anthropology fields. Extensive research has been published in peer-reviewed image processing, forensic anthropology, physical anthropology, biomedical engineering, and clinical orthopedics conferences and journals. The forthcoming discussion of existing methods for morphometric analysis, including manual and semi-automatic methods, addresses the need for automation of morphometric analysis and statistical atlases. Explanations of these existing methods for the construction of statistical shape models, including benefits and limitations of each method, provide evidence of the necessity for such a novel algorithm. A novel approach was taken to achieve accurate point correspondence in case of irregular and deformed anatomy. This was achieved using a scale space approach to detect prominent scale invariant features. These features were then matched and registered using a novel multi-scale method, utilizing both coordinate data as well as shape descriptors, followed by an overall surface deformation using a new constrained free-form deformation. Applications of output statistical atlases are discussed, including forensic applications for the skull sexing, as well as physical anthropology applications, such as asymmetry in clavicles. Clinical applications in pelvis reconstruction and studying of lumbar kinematics and studying thickness of bone and soft tissue are also discussed

Monocular 3d Object Recognition

Object recognition is one of the fundamental tasks of computer vision. Recent advances in the field enable reliable 2D detections from a single cluttered image. However, many challenges still remain. Object detection needs timely response for real world applications. Moreover, we are genuinely interested in estimating the 3D pose and shape of an object or human for the sake of robotic manipulation and human-robot interaction. In this thesis, a suite of solutions to these challenges is presented. First, Active Deformable Part Models (ADPM) is proposed for fast part-based object detection. ADPM dramatically accelerates the detection by dynamically scheduling the part evaluations and efficiently pruning the image locations. Second, we unleash the power of marrying discriminative 2D parts with an explicit 3D geometric representation. Several methods of such scheme are proposed for recovering rich 3D information of both rigid and non-rigid objects from monocular RGB images. (1) The accurate 3D pose of an object instance is recovered from cluttered images using only the CAD model. (2) A global optimal solution for simultaneous 2D part localization, 3D pose and shape estimation is obtained by optimizing a unified convex objective function. Both appearance and geometric compatibility are jointly maximized. (3) 3D human pose estimation from an image sequence is realized via an Expectation-Maximization algorithm. The 2D joint location uncertainties are marginalized out during inference and 3D pose smoothness is enforced across frames. By bridging the gap between 2D and 3D, our methods provide an end-to-end solution to 3D object recognition from images. We demonstrate a range of interesting applications using only a single image or a monocular video, including autonomous robotic grasping with a single image, 3D object image pop-up and a monocular human MoCap system. We also show empirical start-of-art results on a number of benchmarks on 2D detection and 3D pose and shape estimation

Natural Parameterization

The objective of this project has been to develop an approach for imitating physical objects with an underlying stochastic variation. The key assumption is that a set of “natural parameters” can be extracted by a new subdivision algorithm so they reflect what is called the object’s “geometric DNA”. A case study on one hundred wheat grain crosssections (Triticum aestivum) showed that it was possible to extract thirty-six such parameters and to reuse them for Monte Carlo simulation of “new” stochastic phantoms which possessthe same stochastic behavior as the “original” cross-sections

GraffMatch: Global Matching of 3D Lines and Planes for Wide Baseline LiDAR Registration

Using geometric landmarks like lines and planes can increase navigation accuracy and decrease map storage requirements compared to commonly-used LiDAR point cloud maps. However, landmark-based registration for applications like loop closure detection is challenging because a reliable initial guess is not available. Global landmark matching has been investigated in the literature, but these methods typically use ad hoc representations of 3D line and plane landmarks that are not invariant to large viewpoint changes, resulting in incorrect matches and high registration error. To address this issue, we adopt the affine Grassmannian manifold to represent 3D lines and planes and prove that the distance between two landmarks is invariant to rotation and translation if a shift operation is performed before applying the Grassmannian metric. This invariance property enables the use of our graph-based data association framework for identifying landmark matches that can subsequently be used for registration in the least-squares sense. Evaluated on a challenging landmark matching and registration task using publicly-available LiDAR datasets, our approach yields a 1.7x and 3.5x improvement in successful registrations compared to methods that use viewpoint-dependent centroid and "closest point" representations, respectively.Comment: accepted to RA-L; 8 pages. arXiv admin note: text overlap with arXiv:2205.0855