Geo-Information Visualizations of Linked Data

Ponencias, comunicaciones y pósters presentados en el 17th AGILE Conference on Geographic Information Science "Connecting a Digital Europe through Location and Place", celebrado en la Universitat Jaume I del 3 al 6 de junio de 2014.Linked Data provides an ever-growing source of geographically referenced data for application development. In this paper, we analyse the workflow behind the development of such an application. Using two examples based on worldwide development aid and refugee data, we discuss the steps from locating data for use and data integration, up to the actual visualization in a web-based application. At each step, we discuss the skill set required for completion and point to potential challenges. We conclude the paper by putting our case study in the context of GIScience curriculum development

Republishing OpenStreetMap’s roads as linked routable tiles

Route planning providers manually integrate different geo-spatial datasets before offering a Web service to developers, thus creating a closed world view. In contrast, combining open datasets at runtime can provide more information for user-specific route planning needs. For example, an extra dataset of bike sharing availabilities may provide more relevant information to the occasional cyclist. A strategy for automating the adoption of open geo-spatial datasets is needed to allow an ecosystem of route planners able to answer more specific and complex queries. This raises new challenges such as (i) how open geo-spatial datasets should be published on the Web to raise interoperability, and (ii) how route planners can discover and integrate relevant data for a certain query on the fly. We republished OpenStreetMap's road network as "Routable Tiles" to facilitate its integration into open route planners. To achieve this, we use a Linked Data strategy and follow an approach similar to vector tiles. In a demo, we show how client-side code can automatically discover tiles and perform a shortest path algorithm. We provide four contributions: (i) we launched an open geo-spatial dataset that is available for everyone to reuse at no cost, (ii) we published a Linked Data version of the OpenStreetMap ontology, (iii) we introduced a hypermedia specification for vector tiles that extends the Hydra ontology, and (iv) we released the mapping scripts, demo and routing scripts as open source software

Map4rdf - Faceted Browser for Geospatial Datasets

Recently we have seen a large increase in the amount of geospatial data that is being published using RDF and Linked Data principles. Eorts such as the W3C Geo XG, and most recently the GeoSPARQL initiative are providing the necessary vocabularies to pub- lish this kind of information on the Web of Data. In this context it is necessary to develop applications that consume and take advantage of these geospatial datasets. In this paper we present map4rdf, a faceted browsing tool for exploring and visualizing RDF datasets enhanced with geospatial information

Prevalence and Patterns of Microarray Data Sharing

Sharing research data is a cornerstone of science. Although many tools and policies exist to encourage data sharing, the prevalence with which datasets are shared is not well understood. We report our preliminary results on patterns of sharing microarray data in public databases.

The most comprehensive method for measuring occurrences of public data sharing is manual curation of research reports, since data sharing plans are usually communicated in free text within the body of an article. Our early findings from manual curation of 100 papers suggest that 30% of investigators publicly share their full microarray datasets. Of these, 70% of the datasets are deposited at NCBI's Gene Expression Omnibus (GEO) database, 20% at EBI's ArrayExpress, and 10% in smaller databases or lab or publisher websites.

Next, we supplemented this manual process with a rough automated estimate of data sharing prevalence. Using PubMed, we identified research articles with MeSH terms for both "Gene Expression Profiling" and "Oligonucleotide Array Sequence Analysis" and published in 2006. We then searched GEO and ArrayExpress for links to these PubMed IDs to determine which of the articles had been credited as an originating data source.

Of the 2503 articles, 440 (18%) articles had links from either GEO or ArrayExpress. Of these 440 articles, 70% had links from GEO and 30% from ArrayExpress, with an overlapping 12% from both GEO and ArrayExpress.

Interestingly, studies with free full text at PubMed were twice (Odds Ratio=2.1; 95% confidence interval: [1.7 to 2.5]) as likely to be linked as a data source within GEO or ArrayExpress than those without free full text. Studies with human data were less likely to have a link (OR=0.8 [0.6 to 0.9]) than studies with only non-human data. The proportion of articles with a link within these two databases has increased over time: the odds of a data-source link for studies was 2.5 [2.0 to 3.1] times greater for studies published in 2006 than 2002.

As might be expected, studies with the fewest funding sources had the fewest data-sharing links: only 28 (6%) of the 433 studies with no funding source were listed within GEO or ArrayExpress. In contrast, studies funded by the NIH, the US government, or a non-US government source had data-sharing links in 282 of 1556 cases (18%), while studies funded by two or more of these mechanisms were listed in the databases in 130 out of 514 cases (25%).

In summary, our initial manual approach for identifying studies which shared their data was comprehensive but time-consuming; natural language processing techniques could be helpful. Our subsequent automated approach yielded conservative estimates for total data sharing prevalence, nonetheless revealing several promising hypotheses for data sharing behavior

We hope these preliminary results will inspire additional investigations into data sharing behavior, and in turn the development of effective policies and tools to facilitate this important aspect of scientific research

Geo-L: Topological Link Discovery for Geospatial Linked Data Made Easy

Geospatial linked data are an emerging domain, with growing interest in research and the industry. There is an increasing number of publicly available geospatial linked data resources, which can also be interlinked and easily integrated with private and industrial linked data on the web. The present paper introduces Geo-L, a system for the discovery of RDF spatial links based on topological relations. Experiments show that the proposed system improves state-of-the-art spatial linking processes in terms of mapping time and accuracy, as well as concerning resources retrieval efficiency and robustness

GI Systems for public health with an ontology based approach

Dissertation submitted in partial fulfillment of the requirements for the Degree of Master of Science in Geospatial Technologies.Health is an indispensable attribute of human life. In modern age, utilizing technologies for health is one of the emergent concepts in several applied fields. Computer science, (geographic) information systems are some of the interdisciplinary fields which motivates this thesis. Inspiring idea of the study is originated from a rhetorical disease DbHd: Database Hugging Disorder, defined by Hans Rosling at World Bank Open Data speech in May 2010. The cure of this disease can be offered as linked open data, which contains ontologies for health science, diseases, genes, drugs, GEO species etc. LOD-Linked Open Data provides the systematic application of information by publishing and connecting structured data on the Web. In the context of this study we aimed to reduce boundaries between semantic web and geo web. For this reason a use case data is studied from Valencia CSISP- Research Center of Public Health in which the mortality rates for particular diseases are represented spatio-temporally. Use case data is divided into three conceptual domains (health, spatial, statistical), enhanced with semantic relations and descriptions by following Linked Data Principles. Finally in order to convey complex health-related information, we offer an infrastructure integrating geo web and semantic web. Based on the established outcome, user access methods are introduced and future researches/studies are outlined

Assessing the quality of geospatial linked data – experiences from Ordnance Survey Ireland (OSi)

Ordnance Survey Ireland (OSi) is Ireland’s national mapping agency that is responsible for the digitisation of the island’s infrastructure in terms of mapping. Generating data from various sensors (e.g. spatial sensors), OSi build its knowledge in the Prime2 framework, a subset of which is transformed into geo-Linked Data. In this paper we discuss how the quality of the generated sematic data fares against datasets in the LOD cloud. We set up Luzzu, a scalable Linked Data quality assessment framework, in the OSi pipeline to continuously assess produced data in order to tackle any quality problems prior to publishing

Geo-Based Image Analysis Service In Open Source Cloud Computing Environment

Globally, cloud computing is one of huge trends in ICT communities, exerting its influence on the most information application fields including geo-spatial domain. In general, cloud computing services are being regarded as commercial or public internet data center or infrastructure of computing resources. However, there is no limitation for applications of cloud computing. Especially, it is on the early developing stage in geo-based applications. This project is to present a practical application for geo-based image processing and analysis on open source cloud environment. OpenStack Juno version was applied for open source cloud computing environment. On this cloud environment, PostgreSQL and Django were used as open source for metadata server and web framework, respectively. For geo-based image processing server, OTB was used with GDAL for image manipulating. Some image processing algorithms were implemented in this cloud environment, and provides as a web service for public users. Web-accessible users in this cloud service do not need any software installation and downloading data sets. This full open source approach is expected to be an element geo-spatial information processing linked with cloud computing service