The Directed Dominating Set Problem: Generalized Leaf Removal and Belief Propagation

A minimum dominating set for a digraph (directed graph) is a smallest set of vertices such that each vertex either belongs to this set or has at least one parent vertex in this set. We solve this hard combinatorial optimization problem approximately by a local algorithm of generalized leaf removal and by a message-passing algorithm of belief propagation. These algorithms can construct near-optimal dominating sets or even exact minimum dominating sets for random digraphs and also for real-world digraph instances. We further develop a core percolation theory and a replica-symmetric spin glass theory for this problem. Our algorithmic and theoretical results may facilitate applications of dominating sets to various network problems involving directed interactions.Comment: 11 pages, 3 figures in EPS forma

Critical phenomena in complex networks

The combination of the compactness of networks, featuring small diameters, and their complex architectures results in a variety of critical effects dramatically different from those in cooperative systems on lattices. In the last few years, researchers have made important steps toward understanding the qualitatively new critical phenomena in complex networks. We review the results, concepts, and methods of this rapidly developing field. Here we mostly consider two closely related classes of these critical phenomena, namely structural phase transitions in the network architectures and transitions in cooperative models on networks as substrates. We also discuss systems where a network and interacting agents on it influence each other. We overview a wide range of critical phenomena in equilibrium and growing networks including the birth of the giant connected component, percolation, k-core percolation, phenomena near epidemic thresholds, condensation transitions, critical phenomena in spin models placed on networks, synchronization, and self-organized criticality effects in interacting systems on networks. We also discuss strong finite size effects in these systems and highlight open problems and perspectives.Comment: Review article, 79 pages, 43 figures, 1 table, 508 references, extende

Euclidean distance geometry and applications

Euclidean distance geometry is the study of Euclidean geometry based on the concept of distance. This is useful in several applications where the input data consists of an incomplete set of distances, and the output is a set of points in Euclidean space that realizes the given distances. We survey some of the theory of Euclidean distance geometry and some of the most important applications: molecular conformation, localization of sensor networks and statics.Comment: 64 pages, 21 figure

Invariant Manifolds and Rate Constants in Driven Chemical Reactions

Reaction rates of chemical reactions under nonequilibrium conditions can be determined through the construction of the normally hyperbolic invariant manifold (NHIM) [and moving dividing surface (DS)] associated with the transition state trajectory. Here, we extend our recent methods by constructing points on the NHIM accurately even for multidimensional cases. We also advance the implementation of machine learning approaches to construct smooth versions of the NHIM from a known high-accuracy set of its points. That is, we expand on our earlier use of neural nets, and introduce the use of Gaussian process regression for the determination of the NHIM. Finally, we compare and contrast all of these methods for a challenging two-dimensional model barrier case so as to illustrate their accuracy and general applicability.Comment: 28 pages, 13 figures, table of contents figur

VERTEX COVER BASED LINK MONITORING TECHNIQUES FOR WIRELESS SENSOR NETWORKS

VERTEX COVER BASED LINK MONITORING TECHNIQUES FOR WIRELESS SENSOR NETWORKSAbstractWireless sensor networks (WSNs) are generally composed of numerous battery-powered tiny nodes that can sense from the environment and send this data through wireless communication. WSNs have wide range of application areas such as military surveillance, healthcare, miner safety, and outer space exploration. Inherent security weaknesses of wireless communication may prone WSNs to various attacks such as eavesdropping, jamming and spoofing. This situation attracts researchers to study countermeasures for detection and prevention of these attacks. Graph theory provides a very useful theoretical basis for solving WSN problems related to communication and security issues. One of the important graph theoretic structures is vertex cover (VC) in which a set of nodes are selected to cover the edges of the graph where each edge is incident to at least one node in VC set. Finding VC set having the minimum cardinality for a given graph is an NP-hard problem. In this paper, we describe VC algorithms aiming link monitoring where nodes in VC are configured as secure points. We investigate variants of VC problems such as weight and capacity constrained versions on different graph types to meet the energy-efficiency and load-balancing requirements of WSNs. Moreover, we present clustering and backbone formation operations as alternative applications of different VC infrastructures. For each VC sub-problem, we propose greedy heuristic based algorithms.Keywords: Wireless Sensor Networks, Link Monitoring, Graph Theory, Vertex Cover, NP-Hard Problem.KABLOSUZ SENSÖR AĞLARI İÇİN KÖŞE ÖRTME TABANLI BAĞLANTI İZLEME TEKNİKLERİÖzetKablosuz sensor ağlar (KSAlar) genellikle ortamdan algılayabilen ve bu verileri kablosuz iletişim yoluyla gönderebilen pille çalışan çok sayıda küçük düğümden oluşur. KSAlar askeri gözetim, sağlık hizmetleri, madenci güvenliği ve uzay keşfi gibi çok çeşitli uygulama alanlarına sahiptir. Kablosuz iletişimin doğasında var olan güvenlik zayıflıkları, KSAları gizli dinleme, sinyal bozma ve sahtekarlık gibi çeşitli saldırılara eğilimli hale getirebilmektedir. Bu durum, araştırmacıları bu saldırıların tespiti ve önlenmesine yönelik karşı önlemleri incelemeye yöneltmektedir. Çizge teorisi, iletişim ve güvenlik sorunları ile ilgili KSA sorunlarını çözmek için çok yararlı bir teorik temel sağlar. Önemli çizge teorik yapılardan biri köşe örtmedir (KÖ), bu yapıda her bir kenarın KÖ kümesindeki en az bir düğüme bitişik olacak şekilde çizgenin tüm kenarlarını kapsayacak bir dizi düğüm seçilmektedir. Verilen bir çizge için en az elemana sahip KÖ kümesini bulmak NP-zor bir problemdir. Bu makalede, KÖdeki düğümlerin güvenli noktalar olarak yapılandırıldığı bağlantı izlemeyi amaçlayan KÖ algoritmaları açıklanmaktadır. KSAların enerji verimliliği ve yük dengeleme gereksinimlerini karşılamak için, farklı çizge yapılarında KÖ problemlerinin ağırlık ve kapasite kısıtlı versiyonları gibi çeşitli türleri çalışılmaktadır. Ayrıca kümeleme ve omurga oluşturma işlemlerini farklı KÖ altyapılarının alternatif uygulamaları olarak sunulmaktadır. Her KÖ alt problemi için, açgözlü sezgisel tabanlı algoritmalar önerilmektedir.Anahtar Kelimeler: Kablosuz Sensör Ağları, Bağlantı İzleme, Çizge Teorisi, Kenar Örtme, NP-Zor Problem.