Actions on permutations and unimodality of descent polynomials

We study a group action on permutations due to Foata and Strehl and use it to prove that the descent generating polynomial of certain sets of permutations has a nonnegative expansion in the basis $\{t^i(1+t)^{n-1-2i}\}_{i=0}^m$, $m=\lfloor (n-1)/2 \rfloor$. This property implies symmetry and unimodality. We prove that the action is invariant under stack-sorting which strengthens recent unimodality results of B\'ona. We prove that the generalized permutation patterns $(13-2)$ and $(2-31)$ are invariant under the action and use this to prove unimodality properties for a $q$-analog of the Eulerian numbers recently studied by Corteel, Postnikov, Steingr\'{\i}msson and Williams. We also extend the action to linear extensions of sign-graded posets to give a new proof of the unimodality of the $(P,\omega)$-Eulerian polynomials of sign-graded posets and a combinatorial interpretations (in terms of Stembridge's peak polynomials) of the corresponding coefficients when expanded in the above basis. Finally, we prove that the statistic defined as the number of vertices of even height in the unordered decreasing tree of a permutation has the same distribution as the number of descents on any set of permutations invariant under the action. When restricted to the set of stack-sortable permutations we recover a result of Kreweras.Comment: 19 pages, revised version to appear in Europ. J. Combi

Sampling of stochastic operators

We develop sampling methodology aimed at determining stochastic operators that satisfy a support size restriction on the autocorrelation of the operators stochastic spreading function. The data that we use to reconstruct the operator (or, in some cases only the autocorrelation of the spreading function) is based on the response of the unknown operator to a known, deterministic test signal

A Distance-Based Test of Association Between Paired Heterogeneous Genomic Data

Due to rapid technological advances, a wide range of different measurements can be obtained from a given biological sample including single nucleotide polymorphisms, copy number variation, gene expression levels, DNA methylation and proteomic profiles. Each of these distinct measurements provides the means to characterize a certain aspect of biological diversity, and a fundamental problem of broad interest concerns the discovery of shared patterns of variation across different data types. Such data types are heterogeneous in the sense that they represent measurements taken at very different scales or described by very different data structures. We propose a distance-based statistical test, the generalized RV (GRV) test, to assess whether there is a common and non-random pattern of variability between paired biological measurements obtained from the same random sample. The measurements enter the test through distance measures which can be chosen to capture particular aspects of the data. An approximate null distribution is proposed to compute p-values in closed-form and without the need to perform costly Monte Carlo permutation procedures. Compared to the classical Mantel test for association between distance matrices, the GRV test has been found to be more powerful in a number of simulation settings. We also report on an application of the GRV test to detect biological pathways in which genetic variability is associated to variation in gene expression levels in ovarian cancer samples, and present results obtained from two independent cohorts

Graph-based task libraries for robots: generalization and autocompletion

In this paper, we consider an autonomous robot that persists over time performing tasks and the problem of providing one additional task to the robot's task library. We present an approach to generalize tasks, represented as parameterized graphs with sequences, conditionals, and looping constructs of sensing and actuation primitives. Our approach performs graph-structure task generalization, while maintaining task ex- ecutability and parameter value distributions. We present an algorithm that, given the initial steps of a new task, proposes an autocompletion based on a recognized past similar task. Our generalization and auto- completion contributions are eective on dierent real robots. We show concrete examples of the robot primitives and task graphs, as well as results, with Baxter. In experiments with multiple tasks, we show a sig- nicant reduction in the number of new task steps to be provided

Generalized Separable Nonnegative Matrix Factorization

Nonnegative matrix factorization (NMF) is a linear dimensionality technique for nonnegative data with applications such as image analysis, text mining, audio source separation and hyperspectral unmixing. Given a data matrix $M$ and a factorization rank $r$, NMF looks for a nonnegative matrix $W$ with $r$ columns and a nonnegative matrix $H$ with $r$ rows such that $M \approx WH$. NMF is NP-hard to solve in general. However, it can be computed efficiently under the separability assumption which requires that the basis vectors appear as data points, that is, that there exists an index set $\mathcal{K}$ such that $W = M(:,\mathcal{K})$. In this paper, we generalize the separability assumption: We only require that for each rank-one factor $W(:,k)H(k,:)$ for $k=1,2,\dots,r$, either $W(:,k) = M(:,j)$ for some $j$ or $H(k,:) = M(i,:)$ for some $i$. We refer to the corresponding problem as generalized separable NMF (GS-NMF). We discuss some properties of GS-NMF and propose a convex optimization model which we solve using a fast gradient method. We also propose a heuristic algorithm inspired by the successive projection algorithm. To verify the effectiveness of our methods, we compare them with several state-of-the-art separable NMF algorithms on synthetic, document and image data sets.Comment: 31 pages, 12 figures, 4 tables. We have added discussions about the identifiability of the model, we have modified the first synthetic experiment, we have clarified some aspects of the contributio