Minimal Absent Words in Rooted and Unrooted Trees

We extend the theory of minimal absent words to (rooted and unrooted) trees, having edges labeled by letters from an alphabet of cardinality. We show that the set of minimal absent words of a rooted (resp. unrooted) tree T with n nodes has cardinality (resp.), and we show that these bounds are realized. Then, we exhibit algorithms to compute all minimal absent words in a rooted (resp. unrooted) tree in output-sensitive time (resp. assuming an integer alphabet of size polynomial in n

Efficient and Adaptive Parameterized Algorithms on Modular Decompositions

We study the influence of a graph parameter called modular-width on the time complexity for optimally solving well-known polynomial problems such as Maximum Matching, Triangle Counting, and Maximum s-t Vertex-Capacitated Flow. The modular-width of a graph depends on its (unique) modular decomposition tree, and can be computed in linear time O(n+m) for graphs with n vertices and m edges. Modular decompositions are an important tool for graph algorithms, e.g., for linear-time recognition of certain graph classes. Throughout, we obtain efficient parameterized algorithms of running times O(f(mw)n+m), O(n+f(mw)m)or O(f(mw)+n+m) for low polynomial functions f and graphs of modular-width mw. Our algorithm for Maximum Matching, running in time O(mw^2 log mw n+m), is both faster and simpler than the recent O(mw^4n+m) time algorithm of Coudert et al. (SODA 2018). For several other problems, e.g., Triangle Counting and Maximum b-Matching, we give adaptive algorithms, meaning that their running times match the best unparameterized algorithms for worst-case modular-width of mw=Theta(n) and they outperform them already for mw=o(n), until reaching linear time for mw=O(1)

Constructing Antidictionaries in Output-Sensitive Space

A word x that is absent from a word y is called minimal if all its proper factors occur in y. Given a collection of k words y_1,y_2,...,y_k over an alphabet Σ, we are asked to compute the set M^ℓ_y_1#...#y_k of minimal absent words of length at most ℓ of word y=y_1#y_2#...#y_k, #∉Σ. In data compression, this corresponds to computing the antidictionary of k documents. In bioinformatics, it corresponds to computing words that are absent from a genome of k chromosomes. This computation generally requires Ω(n) space for n=|y| using any of the plenty available O(n)-time algorithms. This is because an Ω(n)-sized text index is constructed over y which can be impractical for large n. We do the identical computation incrementally using output-sensitive space. This goal is reasonable when ||M^ℓ_y_1#...#y_N||=o(n), for all N∈[1,k]. For instance, in the human genome, n ≈ 3× 10^9 but ||M^12_y_1#...#y_k|| ≈ 10^6. We consider a constant-sized alphabet for stating our results. We show that all M^ℓ_y_1,...,M^ℓ_y_1#...#y_k can be computed in O(kn+∑^k_N=1||M^ℓ_y_1#...#y_N||) total time using O(MaxIn+MaxOut) space, where MaxIn is the length of the longest word in {y_1,...,y_k} and MaxOut={||M^ℓ_y_1#...#y_N||:N∈[1,k]}. Proof-of-concept experimental results are also provided confirming our theoretical findings and justifying our contribution

Separating pseudo-telepathy games and two-local theories

We give an $\dfrac{1}{54}$ separation between 5-party pseudo-telepathy games and two-local theories. We define the notion of strategy in a k-local theory for a game, and extend the method of Chao and Reichardt. We also study variation of the game to minimize the classical winning probability

Effects of Topology Knowledge and Relay Depth on Asynchronous Appoximate Consensus

Consider a point-to-point message-passing network. We are interested in the asynchronous crash-tolerant consensus problem in incomplete networks. We study the feasibility and efficiency of approximate consensus under different restrictions on topology knowledge and the relay depth, i.e., the maximum number of hops any message can be relayed. These two constraints are common in large-scale networks, and are used to avoid memory overload and network congestion respectively. Specifically, for positive integer values k and k\u27, we consider that each node knows all its neighbors of at most k-hop distance (k-hop topology knowledge), and the relay depth is k\u27. We consider both directed and undirected graphs. More concretely, we answer the following question in asynchronous systems: "What is a tight condition on the underlying communication graphs for achieving approximate consensus if each node has only a k-hop topology knowledge and relay depth k\u27?" To prove that the necessary conditions presented in the paper are also sufficient, we have developed algorithms that achieve consensus in graphs satisfying those conditions: - The first class of algorithms requires k-hop topology knowledge and relay depth k. Unlike prior algorithms, these algorithms do not flood the network, and each node does not need the full topology knowledge. We show how the convergence time and the message complexity of those algorithms is affected by k, providing the respective upper bounds. - The second set of algorithms requires only one-hop neighborhood knowledge, i.e., immediate incoming and outgoing neighbors, but needs to flood the network (i.e., relay depth is n, where n is the number of nodes). One result that may be of independent interest is a topology discovery mechanism to learn and "estimate" the topology in asynchronous directed networks with crash faults

Computational Capabilities of Analog and Evolving Neural Networks over Infinite Input Streams

International audienceAnalog and evolving recurrent neural networks are super-Turing powerful. Here, we consider analog and evolving neural nets over infinite input streams. We then characterize the topological complexity of their ω-languages as a function of the specific analog or evolving weights that they employ. As a consequence, two infinite hierarchies of classes of analog and evolving neural networks based on the complexity of their underlying weights can be derived. These results constitute an optimal refinement of the super-Turing expressive power of analog and evolving neural networks. They show that analog and evolving neural nets represent natural models for oracle-based infinite computation