ICA of Functional MRI Data: An Overview

Independent component analysis (ICA) has found a fruitful application in the analysis of functional magnetic resonance imaging (fMRI) data. A principal advantage of this approach is its applicability to cognitive paradigms for which detailed a priori models of brain activity are not available. ICA has been successfully utilized in a number of exciting fMRI applications including the identification of various signal-types (e.g. task and transiently task-related, and physiology-related signals) in the spatial or temporal domain, the analysis of multi-subject fMRI data, the incorporation of a priori information, and for the analysis of complex-valued fMRI data (which has proved challenging for standard approaches). In this paper, we 1) introduce fMRI data and its properties, 2) review the basic motivation for using ICA on fMRI data, and 3) review the current work on ICA of fMRI with some specific examples from our own work. The purpose of this paper is to motivate ICA research to focus upon this exciting application

Characterization and processing of atrial fibrillation episodes by convolutive blind source separation algorithms and nonlinear analysis of spectral features

Las arritmias supraventriculares, en particular la fibrilación auricular (FA), son las enfermedades cardíacas más comúnmente encontradas en la práctica clínica rutinaria. La prevalencia de la FA es inferior al 1\% en la población menor de 60 años, pero aumenta de manera significativa a partir de los 70 años, acercándose al 10\% en los mayores de 80. El padecimiento de un episodio de FA sostenida, además de estar ligado a una mayor tasa de mortalidad, aumenta la probabilidad de sufrir tromboembolismo, infarto de miocardio y accidentes cerebrovasculares. Por otro lado, los episodios de FA paroxística, aquella que termina de manera espontánea, son los precursores de la FA sostenida, lo que suscita un alto interés entre la comunidad científica por conocer los mecanismos responsables de perpetuar o conducir a la terminación espontánea de los episodios de FA. El análisis del ECG de superficie es la técnica no invasiva más extendida en la diagnosis médica de las patologías cardíacas. Para utilizar el ECG como herramienta de estudio de la FA, se necesita separar la actividad auricular (AA) de las demás señales cardioeléctricas. En este sentido, las técnicas de Separación Ciega de Fuentes (BSS) son capaces de realizar un análisis estadístico multiderivación con el objetivo de recuperar un conjunto de fuentes cardioeléctricas independientes, entre las cuales se encuentra la AA. A la hora de abordar un problema de BSS, se hace necesario considerar un modelo de mezcla de las fuentes lo más ajustado posible a la realidad para poder desarrollar algoritmos matemáticos que lo resuelvan. Un modelo viable es aquel que supone mezclas lineales. Dentro del modelo de mezclas lineales se puede además hacer la restricción de que estas sean instantáneas. Este modelo de mezcla lineal instantánea es el utilizado en el Análisis de Componentes Independientes (ICA).Vayá Salort, C. (2010). Characterization and processing of atrial fibrillation episodes by convolutive blind source separation algorithms and nonlinear analysis of spectral features [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/8416Palanci

Any-way and Sparse Analyses for Multimodal Fusion and Imaging Genomics

This dissertation aims to develop new algorithms that leverage sparsity and mutual information across data modalities built upon the independent component analysis (ICA) framework to improve the performance of current ICA-based multimodal fusion approaches. These algorithms are further applied to both simulated data and real neuroimaging and genomic data to examine their performance. The identified neuroimaging and genomic patterns can help better delineate the pathology of mental disorders or brain development. To alleviate the signal-background separation difficulties in infomax-decomposed sources for genomic data, we propose a sparse infomax by enhancing a robust sparsity measure, the Hoyer index. Hoyer index is scale-invariant and well suited for ICA frameworks since the scale of decomposed sources is arbitrary. Simulation results demonstrate that sparse infomax increases the component detection accuracy for situations where the source signal-to-background (SBR) ratio is low, particularly for single nucleotide polymorphism (SNP) data. The proposed sparse infomax is further extended into two data modalities as a sparse parallel ICA for applications to imaging genomics in order to investigate the associations between brain imaging and genomics. Simulation results show that sparse parallel ICA outperforms parallel ICA with improved accuracy for structural magnetic resonance imaging (sMRI)-SNP association detection and component spatial map recovery, as well as with enhanced sparsity for sMRI and SNP components under noisy cases. Applying the proposed sparse parallel ICA to fuse the whole-brain sMRI and whole-genome SNP data of 24985 participants in the UK biobank, we identify three stable and replicable sMRI-SNP pairs. The identified sMRI components highlight frontal, parietal, and temporal regions and associate with multiple cognitive measures (with different association strengths in different age groups for the temporal component). Top SNPs in the identified SNP factor are enriched in inflammatory disease and inflammatory response pathways, which also regulate gene expression, isoform percentage, transcription expression, or methylation level in the frontal region, and the regulation effects are significantly enriched. Applying the proposed sparse parallel ICA to imaging genomics in attention-deficit/hyperactivity disorder (ADHD), we identify and replicate one SNP component related to gray matter volume (GMV) alterations in superior and middle frontal gyri underlying working memory deficit in adults and adolescents with ADHD. The association is more significant in ADHD families than controls and stronger in adults and older adolescents than younger ones. The identified SNP component highlights SNPs in long non-coding RNAs (lncRNAs) in chromosome 5 and in several protein-coding genes that are involved in ADHD, such as MEF2C, CADM2, and CADPS2. Top SNPs are enriched in human brain neuron cells and regulate gene expression, isoform percentage, transcription expression, or methylation level in the frontal region. Moreover, to increase the flexibility and robustness in mining multimodal data, we propose aNy-way ICA, which optimizes the entire correlation structure of linked components across any number of modalities via the Gaussian independent vector analysis and simultaneously optimizes independence via separate (parallel) ICAs. Simulation results demonstrate that aNy-way ICA recover sources and loadings, as well as the true covariance patterns with improved accuracy compared to existing multimodal fusion approaches, especially under noisy conditions. Applying the proposed aNy-way ICA to integrate structural MRI, fractal n-back, and emotion identification task functional MRIs collected in the Philadelphia Neurodevelopmental Cohort (PNC), we identify and replicate one linked GMV-threat-2-back component, and the threat and 2-back components are related to intelligence quotient (IQ) score in both discovery and replication samples. Lastly, we extend the proposed aNy-way ICA with a reference constraint to enable prior-guided multimodal fusion. Simulation results show that aNy-way ICA with reference recovers the designed linkages between reference and modalities, cross-modality correlations, as well as loading and component matrices with improved accuracy compared to multi-site canonical correlation analysis with reference (MCCAR)+joint ICA under noisy conditions. Applying aNy-way ICA with reference to supervise structural MRI, fractal n-back, and emotion identification task functional MRIs fusion in PNC with IQ as the reference, we identify and replicate one IQ-related GMV-threat-2-back component, and this component is significantly correlated across modalities in both discovery and replication samples.Ph.D

Object-based audio capture : separating acoustically-mixed sounds

Thesis (S.M.)--Massachusetts Institute of Technology, School of Architecture and Planning, Program in Media Arts and Sciences, 1999.Includes bibliographical references (p. 111-114).This thesis investigates how a digital system can recognize and isolate individual sound sources, or audio objects, from an environment containing several sounds. The main contribution of this work is the application of object-based audio capture to unconstrained real-world environments. Several potential applications for object-based audio capture are outlined, and current blind source separation and deconvolution (BSSD) algorithms that have been applied to acoustically-mixed sounds are reviewed. An explanation of the acoustics issues in object-based audio capture is provided, including an argument for using overdetermined mixtures to yield better source separation. A thorough discussion of the difficulties imposed by a real-world environment is offered, followed by several experiments which compare how different filter configurations and filter lengths, as well as reverberant environments, all have an impact on the performance of object-based audio capture. A real-world implementation of object-based audio capture in a conference room with two people speaking is also discussed. This thesis concludes with future directions for research in object-based audio capture.Alexander George Westner.S.M