Asymmetric Geodesic Distance Propagation for Active Contours

This is the final version. Available from British Machine Vision Association (BMVA) via the link in this record. The dual-front scheme is a powerful curve evolution tool for active contours and image segmentation, which has proven its capability in dealing with various segmentation tasks. In its basic formulation, a contour is represented by the interface of two adjacent Voronoi regions derived from the geodesic distance map which is the solution to an Eikonal equation. The original dual-front model [17] is based on isotropic metrics, and thus cannot take into account the asymmetric enhancements during curve evolution. In this paper, we propose a new asymmetric dual-front curve evolution model through an asymmetric Finsler geodesic metric, which is constructed in terms of the extended normal vector field of the current contour and the image data. The experimental results demonstrate the advantages of the proposed method in computational efficiency, robustness and accuracy when compared to the original isotropic dual-front model.Roche pharmaAgence Nationale de la Recherch

Disconnected Skeleton: Shape at its Absolute Scale

We present a new skeletal representation along with a matching framework to address the deformable shape recognition problem. The disconnectedness arises as a result of excessive regularization that we use to describe a shape at an attainably coarse scale. Our motivation is to rely on the stable properties of the shape instead of inaccurately measured secondary details. The new representation does not suffer from the common instability problems of traditional connected skeletons, and the matching process gives quite successful results on a diverse database of 2D shapes. An important difference of our approach from the conventional use of the skeleton is that we replace the local coordinate frame with a global Euclidean frame supported by additional mechanisms to handle articulations and local boundary deformations. As a result, we can produce descriptions that are sensitive to any combination of changes in scale, position, orientation and articulation, as well as invariant ones.Comment: The work excluding {\S}V and {\S}VI has first appeared in 2005 ICCV: Aslan, C., Tari, S.: An Axis-Based Representation for Recognition. In ICCV(2005) 1339- 1346.; Aslan, C., : Disconnected Skeletons for Shape Recognition. Masters thesis, Department of Computer Engineering, Middle East Technical University, May 200

Microstructural Analysis for Dynamic Pulverization and Asymmetric Damage at the Base of Seismogenic Strike-slip Faults

Although the mechanics of continental, seismogenic strike-slip faults have been primarily studied around active faults near Earth’s surface, large earthquakes on these faults commonly extend to depths between 10 and 20 km. At the base of seismogenic strike-slip faults, interaction and feedback between coseismic brittle fracturing and post- and interseismic viscous flow affect transient and long-term changes in stress cycling, fluid and heat transport, fault strength, and associated strain localization and deformation mechanisms. A primary goal of my dissertation is to explore the deeper structures of damage zones near the base of the seismogenic zone and to better understand the influence of the damaged rocks on rupture dynamics, by examining microstructures of exhumed fault rocks. My study area, the Sandhill Corner shear zone that is the longest strand of the Paleozoic Norumbega fault system in Maine, USA, represents large-displacement, seismogenic strike-slip faults at frictional-to-viscous transition depths (corresponding to temperatures of ~400–500 °C). The shear zone contains mutually overprinting pseudotachylyte and mylonite, and juxtaposes quartzofeldspathic mylonites and mica-rich schists. I analyzed fractured and fragmented garnet grains using particle size distributions, microfracture patterns, and electron backscatter diffraction fabrics. Microstructural studies of fragmented garnets reveal asymmetric distribution of dynamic pulverization with a width of ~70 m in the Sandhill Corner shear zone, and these results imply that the same damage processes observed around active seismogenic strike-slip faults operate at the base of the seismogenic zone. Garnet microstructures formed during earthquake cycles at the frictional-viscous transition can also provide evidence for dynamic pulverization even though the particle size distribution is modified by quasi-static fragmentation during post- and interseismic shearing. Elastic and seismic properties of the quartzofeldspathic rock and the mica-rich schist are quantified using the Thermo-Elastic and Seismic Analysis (TESA) numerical toolbox. The results illustrate how elastic contrast across bimaterial faults separating two different anisotropic materials affects preferred rupture propagation and asymmetric damage distribution. Strong anisotropy occurs in fault zones where preferentially aligned phyllosilicate minerals are a major component of the modal mineralogy. My findings suggest that the orientation and proportion of preferentially aligned phyllosilicates, or other highly anisotropic minerals, should be considered when investigating fault ruptures in anisotropic rocks

Solid NURBS Conforming Scaffolding for Isogeometric Analysis

This work introduces a scaffolding framework to compactly parametrise solid structures with conforming NURBS elements for isogeometric analysis. A novel formulation introduces a topological, geometrical and parametric subdivision of the space in a minimal plurality of conforming vectorial elements. These determine a multi-compartmental scaffolding for arbitrary branching patterns. A solid smoothing paradigm is devised for the conforming scaffolding achieving higher than positional geometrical and parametric continuity. Results are shown for synthetic shapes of varying complexity, for modular CAD geometries, for branching structures from tessellated meshes and for organic biological structures from imaging data. Representative simulations demonstrate the validity of the introduced scaffolding framework with scalable performance and groundbreaking applications for isogeometric analysis

A statistical approach for fracture property realization and macroscopic failure analysis of brittle materials

Lacking the energy dissipative mechanics such as plastic deformation to rebalance localized stresses, similar to their ductile counterparts, brittle material fracture mechanics is associated with catastrophic failure of purely brittle and quasi-brittle materials at immeasurable and measurable deformation scales respectively. This failure, in the form macroscale sharp cracks, is highly dependent on the composition of the material microstructure. Further, the complexity of this relationship and the resulting crack patterns is exacerbated under highly dynamic loading conditions. A robust brittle material model must account for the multiscale inhomogeneity as well as the probabilistic distribution of the constituents which cause material heterogeneity and influence the complex mechanisms of dynamic fracture responses of the material. Continuum-based homogenization is carried out via finite element-based micromechanical analysis of a material neighbor which gives is geometrically described as a sampling windows (i.e., statistical volume elements). These volume elements are well-defined such that they are representative of the material while propagating material randomness from the inherent microscale defects. Homogenization yields spatially defined elastic and fracture related effective properties, utilized to statistically characterize the material in terms of these properties. This spatial characterization is made possible by performing homogenization at prescribed spatial locations which collectively comprise a non-uniform spatial grid which allows the mapping of each effective material properties to an associated spatial location. Through stochastic decomposition of the derived empirical covariance of the sampled effective material property, the Karhunen-Loeve method is used to generate realizations of a continuous and spatially-correlated random field approximation that preserve the statistics of the material from which it is derived. Aspects of modeling both isotropic and anisotropic brittle materials, from a statistical viewpoint, are investigated to determine how each influences the macroscale fracture response of these materials under highly dynamic conditions. The effects of modeling a material both explicitly by representations of discrete multiscale constituents and/or implicitly by continuum representation of material properties is studies to determine how each model influences the resulting material fracture response. For the implicit material representations, both a statistical white noise (i.e., Weibull-based spatially-uncorrelated) and colored noise (i.e., Karhunen-Loeve spatially-correlated model) random fields are employed herein

AutoGraff: towards a computational understanding of graffiti writing and related art forms.

The aim of this thesis is to develop a system that generates letters and pictures with a style that is immediately recognizable as graffiti art or calligraphy. The proposed system can be used similarly to, and in tight integration with, conventional computer-aided geometric design tools and can be used to generate synthetic graffiti content for urban environments in games and in movies, and to guide robotic or fabrication systems that can materialise the output of the system with physical drawing media. The thesis is divided into two main parts. The first part describes a set of stroke primitives, building blocks that can be combined to generate different designs that resemble graffiti or calligraphy. These primitives mimic the process typically used to design graffiti letters and exploit well known principles of motor control to model the way in which an artist moves when incrementally tracing stylised letter forms. The second part demonstrates how these stroke primitives can be automatically recovered from input geometry defined in vector form, such as the digitised traces of writing made by a user, or the glyph outlines in a font. This procedure converts the input geometry into a seed that can be transformed into a variety of calligraphic and graffiti stylisations, which depend on parametric variations of the strokes

Inferring Geodesic Cerebrovascular Graphs: Image Processing, Topological Alignment and Biomarkers Extraction

A vectorial representation of the vascular network that embodies quantitative features - location, direction, scale, and bifurcations - has many potential neuro-vascular applications. Patient-specific models support computer-assisted surgical procedures in neurovascular interventions, while analyses on multiple subjects are essential for group-level studies on which clinical prediction and therapeutic inference ultimately depend. This first motivated the development of a variety of methods to segment the cerebrovascular system. Nonetheless, a number of limitations, ranging from data-driven inhomogeneities, the anatomical intra- and inter-subject variability, the lack of exhaustive ground-truth, the need for operator-dependent processing pipelines, and the highly non-linear vascular domain, still make the automatic inference of the cerebrovascular topology an open problem. In this thesis, brain vessels’ topology is inferred by focusing on their connectedness. With a novel framework, the brain vasculature is recovered from 3D angiographies by solving a connectivity-optimised anisotropic level-set over a voxel-wise tensor field representing the orientation of the underlying vasculature. Assuming vessels joining by minimal paths, a connectivity paradigm is formulated to automatically determine the vascular topology as an over-connected geodesic graph. Ultimately, deep-brain vascular structures are extracted with geodesic minimum spanning trees. The inferred topologies are then aligned with similar ones for labelling and propagating information over a non-linear vectorial domain, where the branching pattern of a set of vessels transcends a subject-specific quantized grid. Using a multi-source embedding of a vascular graph, the pairwise registration of topologies is performed with the state-of-the-art graph matching techniques employed in computer vision. Functional biomarkers are determined over the neurovascular graphs with two complementary approaches. Efficient approximations of blood flow and pressure drop account for autoregulation and compensation mechanisms in the whole network in presence of perturbations, using lumped-parameters analog-equivalents from clinical angiographies. Also, a localised NURBS-based parametrisation of bifurcations is introduced to model fluid-solid interactions by means of hemodynamic simulations using an isogeometric analysis framework, where both geometry and solution profile at the interface share the same homogeneous domain. Experimental results on synthetic and clinical angiographies validated the proposed formulations. Perspectives and future works are discussed for the group-wise alignment of cerebrovascular topologies over a population, towards defining cerebrovascular atlases, and for further topological optimisation strategies and risk prediction models for therapeutic inference. Most of the algorithms presented in this work are available as part of the open-source package VTrails