Fifty years of Hoare's Logic

We present a history of Hoare's logic.Comment: 79 pages. To appear in Formal Aspects of Computin

Fair Testing

In this paper we present a solution to the long-standing problem of characterising the coarsest liveness-preserving pre-congruence with respect to a full (TCSP-inspired) process algebra. In fact, we present two distinct characterisations, which give rise to the same relation: an operational one based on a De Nicola-Hennessy-like testing modality which we call should-testing, and a denotational one based on a refined notion of failures. One of the distinguishing characteristics of the should-testing pre-congruence is that it abstracts from divergences in the same way as Milner¿s observation congruence, and as a consequence is strictly coarser than observation congruence. In other words, should-testing has a built-in fairness assumption. This is in itself a property long sought-after; it is in notable contrast to the well-known must-testing of De Nicola and Hennessy (denotationally characterised by a combination of failures and divergences), which treats divergence as catrastrophic and hence is incompatible with observation congruence. Due to these characteristics, should-testing supports modular reasoning and allows to use the proof techniques of observation congruence, but also supports additional laws and techniques. Moreover, we show decidability of should-testing (on the basis of the denotational characterisation). Finally, we demonstrate its advantages by the application to a number of examples, including a scheduling problem, a version of the Alternating Bit-protocol, and fair lossy communication channel

FAIRness and Usability for Open-access Omics Data Systems

Omics data sharing is crucial to the biological research community, and the last decade or two has seen a huge rise in collaborative analysis systems, databases, and knowledge bases for omics and other systems biology data. We assessed the FAIRness of NASAs GeneLab Data Systems (GLDS) along with four similar kinds of systems in the research omics data domain, using 14 FAIRness metrics. The range of overall FAIRness scores was 6-12 (out of 14), average 10.1, and standard deviation 2.4. The range of Pass ratings for the metrics was 29-79%, Partial Pass 0-21%, and Fail 7-50%. The systems we evaluated performed the best in the areas of data findability and accessibility, and worst in the area of data interoperability. Reusability of metadata, in particular, was frequently not well supported. We relate our experiences implementing semantic integration of omics data from some of the assessed systems for federated querying and retrieval functions, given their shortcomings in data interoperability. Finally, we propose two new principles that Big Data system developers, in particular, should consider for maximizing data accessibility

A Bounded Domain Property for an Expressive Fragment of First-Order Linear Temporal Logic

First-Order Linear Temporal Logic (FOLTL) is well-suited to specify infinite-state systems. However, FOLTL satisfiability is not even semi-decidable, thus preventing automated verification. To address this, a possible track is to constrain specifications to a decidable fragment of FOLTL, but known fragments are too restricted to be usable in practice. In this paper, we exhibit various fragments of increasing scope that provide a pertinent basis for abstract specification of infinite-state systems. We show that these fragments enjoy the Bounded Domain Property (any satisfiable FOLTL formula has a model with a finite, bounded FO domain), which provides a basis for complete, automated verification by reduction to LTL satisfiability. Finally, we present a simple case study illustrating the applicability and limitations of our results

Read Operators and their Expressiveness in Process Algebras

We study two different ways to enhance PAFAS, a process algebra for modelling asynchronous timed concurrent systems, with non-blocking reading actions. We first add reading in the form of a read-action prefix operator. This operator is very flexible, but its somewhat complex semantics requires two types of transition relations. We also present a read-set prefix operator with a simpler semantics, but with syntactic restrictions. We discuss the expressiveness of read prefixes; in particular, we compare them to read-arcs in Petri nets and justify the simple semantics of the second variant by showing that its processes can be translated into processes of the first with timed-bisimilar behaviour. It is still an open problem whether the first algebra is more expressive than the second; we give a number of laws that are interesting in their own right, and can help to find a backward translation.Comment: In Proceedings EXPRESS 2011, arXiv:1108.407

Explicit fairness in testing semantics

In this paper we investigate fair computations in the pi-calculus. Following Costa and Stirling's approach for CCS-like languages, we consider a method to label process actions in order to filter out unfair computations. We contrast the existing fair-testing notion with those that naturally arise by imposing weak and strong fairness. This comparison provides insight about the expressiveness of the various `fair' testing semantics and about their discriminating power.Comment: 27 pages, 1 figure, appeared in LMC