Improving reproducibility and reuse of modelling results in the life sciences

Research results are complex and include a variety of heterogeneous data. This entails major computational challenges to (i) to manage simulation studies, (ii) to ensure model exchangeability, stability and validity, and (iii) to foster communication between partners. I describe techniques to improve the reproducibility and reuse of modelling results. First, I introduce a method to characterise differences in computational models. Second, I present approaches to obtain shareable and reproducible research results. Altogether, my methods and tools foster exchange and reuse of modelling results.Die verteilte Entwicklung von komplexen Simulationsstudien birgt eine große Zahl an informationstechnischen Herausforderungen: (i) Modelle müssen verwaltet werden; (ii) Reproduzierbarkeit, Stabilität und Gültigkeit von Ergebnissen muss sichergestellt werden; und (iii) die Kommunikation zwischen Partnern muss verbessert werden. Ich stelle Techniken vor, um die Reproduzierbarkeit und Wiederverwendbarkeit von Modellierungsergebnissen zu verbessern. Meine Implementierungen wurden erfolgreich in internationalen Anwendungen integriert und fördern das Teilen von wissenschaftlichen Ergebnissen

Linked democracy : foundations, tools, and applications

Chapter 1Introduction to Linked DataAbstractThis chapter presents Linked Data, a new form of distributed data on theweb which is especially suitable to be manipulated by machines and to shareknowledge. By adopting the linked data publication paradigm, anybody can publishdata on the web, relate it to data resources published by others and run artificialintelligence algorithms in a smooth manner. Open linked data resources maydemocratize the future access to knowledge by the mass of internet users, eitherdirectly or mediated through algorithms. Governments have enthusiasticallyadopted these ideas, which is in harmony with the broader open data movement

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

Background: The automation of data analysis in the form of scientific workflows has become a widely adopted practice in many fields of research. Computationally driven data-intensive experiments using workflows enable Automation, Scaling, Adaption and Provenance support (ASAP). However, there are still several challenges associated with the effective sharing, publication and reproducibility of such workflows due to the incomplete capture of provenance and lack of interoperability between different technical (software) platforms. Results: Based on best practice recommendations identified from literature on workflow design, sharing and publishing, we define a hierarchical provenance framework to achieve uniformity in the provenance and support comprehensive and fully re-executable workflows equipped with domain-specific information. To realise this framework, we present CWLProv, a standard-based format to represent any workflow-based computational analysis to produce workflow output artefacts that satisfy the various levels of provenance. We utilise open source community-driven standards; interoperable workflow definitions in Common Workflow Language (CWL), structured provenance representation using the W3C PROV model, and resource aggregation and sharing as workflow-centric Research Objects (RO) generated along with the final outputs of a given workflow enactment. We demonstrate the utility of this approach through a practical implementation of CWLProv and evaluation using real-life genomic workflows developed by independent groups. Conclusions: The underlying principles of the standards utilised by CWLProv enable semantically-rich and executable Research Objects that capture computational workflows with retrospective provenance such that any platform supporting CWL will be able to understand the analysis, re-use the methods for partial re-runs, or reproduce the analysis to validate the published findings.Submitted to GigaScience (GIGA-D-18-00483

Linked Democracy

This open access book shows the factors linking information flow, social intelligence, rights management and modelling with epistemic democracy, offering licensed linked data along with information about the rights involved. This model of democracy for the web of data brings new challenges for the social organisation of knowledge, collective innovation, and the coordination of actions. Licensed linked data, licensed linguistic linked data, right expression languages, semantic web regulatory models, electronic institutions, artificial socio-cognitive systems are examples of regulatory and institutional design (regulations by design). The web has been massively populated with both data and services, and semantically structured data, the linked data cloud, facilitates and fosters human-machine interaction. Linked data aims to create ecosystems to make it possible to browse, discover, exploit and reuse data sets for applications. Rights Expression Languages semi-automatically regulate the use and reuse of content. ; Links information flow, social intelligence, rights management, and modelling with epistemic democracy Presents examples of regulatory and institutional desig

A survey on the development status and application prospects of knowledge graph in smart grids

With the advent of the electric power big data era, semantic interoperability and interconnection of power data have received extensive attention. Knowledge graph technology is a new method describing the complex relationships between concepts and entities in the objective world, which is widely concerned because of its robust knowledge inference ability. Especially with the proliferation of measurement devices and exponential growth of electric power data empowers, electric power knowledge graph provides new opportunities to solve the contradictions between the massive power resources and the continuously increasing demands for intelligent applications. In an attempt to fulfil the potential of knowledge graph and deal with the various challenges faced, as well as to obtain insights to achieve business applications of smart grids, this work first presents a holistic study of knowledge-driven intelligent application integration. Specifically, a detailed overview of electric power knowledge mining is provided. Then, the overview of the knowledge graph in smart grids is introduced. Moreover, the architecture of the big knowledge graph platform for smart grids and critical technologies are described. Furthermore, this paper comprehensively elaborates on the application prospects leveraged by knowledge graph oriented to smart grids, power consumer service, decision-making in dispatching, and operation and maintenance of power equipment. Finally, issues and challenges are summarised.Comment: IET Generation, Transmission & Distributio