Exact Algorithms via Multivariate Subroutines

We consider the family of Phi-Subset problems, where the input consists of an instance I of size N over a universe U_I of size n and the task is to check whether the universe contains a subset with property Phi (e.g., Phi could be the property of being a feedback vertex set for the input graph of size at most k). Our main tool is a simple randomized algorithm which solves Phi-Subset in time (1+b-(1/c))^n N^(O(1)), provided that there is an algorithm for the Phi-Extension problem with running time b^{n-|X|} c^k N^{O(1)}. Here, the input for Phi-Extension is an instance I of size N over a universe U_I of size n, a subset X subseteq U_I, and an integer k, and the task is to check whether there is a set Y with X subseteq Y subseteq U_I and |Y X| <= k with property Phi. We derandomize this algorithm at the cost of increasing the running time by a subexponential factor in n, and we adapt it to the enumeration setting where we need to enumerate all subsets of the universe with property Phi. This generalizes the results of Fomin et al. [STOC 2016] who proved the case where b=1. As case studies, we use these results to design faster deterministic algorithms for: - checking whether a graph has a feedback vertex set of size at most k - enumerating all minimal feedback vertex sets - enumerating all minimal vertex covers of size at most k, and - enumerating all minimal 3-hitting sets. We obtain these results by deriving new b^{n-|X|} c^k N^{O(1)}-time algorithms for the corresponding Phi-Extension problems (or enumeration variant). In some cases, this is done by adapting the analysis of an existing algorithm, or in other cases by designing a new algorithm. Our analyses are based on Measure and Conquer, but the value to minimize, 1+b-(1/c), is unconventional and requires non-convex optimization

Finding Induced Subgraphs via Minimal Triangulations

Potential maximal cliques and minimal separators are combinatorial objects which were introduced and studied in the realm of minimal triangulations problems including Minimum Fill-in and Treewidth. We discover unexpected applications of these notions to the field of moderate exponential algorithms. In particular, we show that given an n-vertex graph G together with its set of potential maximal cliques Pi_G, and an integer t, it is possible in time |Pi_G| * n^(O(t)) to find a maximum induced subgraph of treewidth t in G; and for a given graph F of treewidth t, to decide if G contains an induced subgraph isomorphic to F. Combined with an improved algorithm enumerating all potential maximal cliques in time O(1.734601^n), this yields that both problems are solvable in time 1.734601^n * n^(O(t)).Comment: 14 page

Polynomial Delay Algorithm for Listing Minimal Edge Dominating sets in Graphs

The Transversal problem, i.e, the enumeration of all the minimal transversals of a hypergraph in output-polynomial time, i.e, in time polynomial in its size and the cumulated size of all its minimal transversals, is a fifty years old open problem, and up to now there are few examples of hypergraph classes where the problem is solved. A minimal dominating set in a graph is a subset of its vertex set that has a non empty intersection with the closed neighborhood of every vertex. It is proved in [M. M. Kant\'e, V. Limouzy, A. Mary, L. Nourine, On the Enumeration of Minimal Dominating Sets and Related Notions, In Revision 2014] that the enumeration of minimal dominating sets in graphs and the enumeration of minimal transversals in hypergraphs are two equivalent problems. Hoping this equivalence can help to get new insights in the Transversal problem, it is natural to look inside graph classes. It is proved independently and with different techniques in [Golovach et al. - ICALP 2013] and [Kant\'e et al. - ISAAC 2012] that minimal edge dominating sets in graphs (i.e, minimal dominating sets in line graphs) can be enumerated in incremental output-polynomial time. We provide the first polynomial delay and polynomial space algorithm that lists all the minimal edge dominating sets in graphs, answering an open problem of [Golovach et al. - ICALP 2013]. Besides the result, we hope the used techniques that are a mix of a modification of the well-known Berge's algorithm and a strong use of the structure of line graphs, are of great interest and could be used to get new output-polynomial time algorithms.Comment: proofs simplified from previous version, 12 pages, 2 figure

A Polynomial Delay Algorithm for Enumerating Minimal Dominating Sets in Chordal Graphs

An output-polynomial algorithm for the listing of minimal dominating sets in graphs is a challenging open problem and is known to be equivalent to the well-known Transversal problem which asks for an output-polynomial algorithm for listing the set of minimal hitting sets in hypergraphs. We give a polynomial delay algorithm to list the set of minimal dominating sets in chordal graphs, an important and well-studied graph class where such an algorithm was open for a while.Comment: 13 pages, 1 figure, submitte

Digraph Complexity Measures and Applications in Formal Language Theory

We investigate structural complexity measures on digraphs, in particular the cycle rank. This concept is intimately related to a classical topic in formal language theory, namely the star height of regular languages. We explore this connection, and obtain several new algorithmic insights regarding both cycle rank and star height. Among other results, we show that computing the cycle rank is NP-complete, even for sparse digraphs of maximum outdegree 2. Notwithstanding, we provide both a polynomial-time approximation algorithm and an exponential-time exact algorithm for this problem. The former algorithm yields an O((log n)^(3/2))- approximation in polynomial time, whereas the latter yields the optimum solution, and runs in time and space O*(1.9129^n) on digraphs of maximum outdegree at most two. Regarding the star height problem, we identify a subclass of the regular languages for which we can precisely determine the computational complexity of the star height problem. Namely, the star height problem for bideterministic languages is NP-complete, and this holds already for binary alphabets. Then we translate the algorithmic results concerning cycle rank to the bideterministic star height problem, thus giving a polynomial-time approximation as well as a reasonably fast exact exponential algorithm for bideterministic star height.Comment: 19 pages, 1 figur

Connecting Terminals and 2-Disjoint Connected Subgraphs

Given a graph $G=(V,E)$ and a set of terminal vertices $T$ we say that a superset $S$ of $T$ is $T$-connecting if $S$ induces a connected graph, and $S$ is minimal if no strict subset of $S$ is $T$-connecting. In this paper we prove that there are at most ${|V \setminus T| \choose |T|-2} \cdot 3^{\frac{|V \setminus T|}{3}}$ minimal $T$-connecting sets when $|T| \leq n/3$ and that these can be enumerated within a polynomial factor of this bound. This generalizes the algorithm for enumerating all induced paths between a pair of vertices, corresponding to the case $|T|=2$. We apply our enumeration algorithm to solve the {\sc 2-Disjoint Connected Subgraphs} problem in time $O^*(1.7804^n)$, improving on the recent $O^*(1.933^n)$ algorithm of Cygan et al. 2012 LATIN paper.Comment: 13 pages, 1 figur

Enumerating Minimal Connected Dominating Sets in Graphs of Bounded Chordality

Listing, generating or enumerating objects of specified type is one of the principal tasks in algorithmics. In graph algorithms one often enumerates vertex subsets satisfying a certain property. We study the enumeration of all minimal connected dominating sets of an input graph from various graph classes of bounded chordality. We establish enumeration algorithms as well as lower and upper bounds for the maximum number of minimal connected dominating sets in such graphs. In particular, we present algorithms to enumerate all minimal connected dominating sets of chordal graphs in time O(1.7159^n), of split graphs in time O(1.3803^n), and of AT-free, strongly chordal, and distance-hereditary graphs in time O^*(3^{n/3}), where n is the number of vertices of the input graph. Our algorithms imply corresponding upper bounds for the number of minimal connected dominating sets for these graph classes