44,493 research outputs found
Cortical spatio-temporal dimensionality reduction for visual grouping
The visual systems of many mammals, including humans, is able to integrate
the geometric information of visual stimuli and to perform cognitive tasks
already at the first stages of the cortical processing. This is thought to be
the result of a combination of mechanisms, which include feature extraction at
single cell level and geometric processing by means of cells connectivity. We
present a geometric model of such connectivities in the space of detected
features associated to spatio-temporal visual stimuli, and show how they can be
used to obtain low-level object segmentation. The main idea is that of defining
a spectral clustering procedure with anisotropic affinities over datasets
consisting of embeddings of the visual stimuli into higher dimensional spaces.
Neural plausibility of the proposed arguments will be discussed
Fast filtering and animation of large dynamic networks
Detecting and visualizing what are the most relevant changes in an evolving
network is an open challenge in several domains. We present a fast algorithm
that filters subsets of the strongest nodes and edges representing an evolving
weighted graph and visualize it by either creating a movie, or by streaming it
to an interactive network visualization tool. The algorithm is an approximation
of exponential sliding time-window that scales linearly with the number of
interactions. We compare the algorithm against rectangular and exponential
sliding time-window methods. Our network filtering algorithm: i) captures
persistent trends in the structure of dynamic weighted networks, ii) smoothens
transitions between the snapshots of dynamic network, and iii) uses limited
memory and processor time. The algorithm is publicly available as open-source
software.Comment: 6 figures, 2 table
Recovering complete and draft population genomes from metagenome datasets.
Assembly of metagenomic sequence data into microbial genomes is of fundamental value to improving our understanding of microbial ecology and metabolism by elucidating the functional potential of hard-to-culture microorganisms. Here, we provide a synthesis of available methods to bin metagenomic contigs into species-level groups and highlight how genetic diversity, sequencing depth, and coverage influence binning success. Despite the computational cost on application to deeply sequenced complex metagenomes (e.g., soil), covarying patterns of contig coverage across multiple datasets significantly improves the binning process. We also discuss and compare current genome validation methods and reveal how these methods tackle the problem of chimeric genome bins i.e., sequences from multiple species. Finally, we explore how population genome assembly can be used to uncover biogeographic trends and to characterize the effect of in situ functional constraints on the genome-wide evolution
Automatic Clustering with Single Optimal Solution
Determining optimal number of clusters in a dataset is a challenging task.
Though some methods are available, there is no algorithm that produces unique
clustering solution. The paper proposes an Automatic Merging for Single Optimal
Solution (AMSOS) which aims to generate unique and nearly optimal clusters for
the given datasets automatically. The AMSOS is iteratively merges the closest
clusters automatically by validating with cluster validity measure to find
single and nearly optimal clusters for the given data set. Experiments on both
synthetic and real data have proved that the proposed algorithm finds single
and nearly optimal clustering structure in terms of number of clusters,
compactness and separation.Comment: 13 pages,4 Tables, 3 figure
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