Simultaneous Finite Automata: An Efficient Data-Parallel Model for Regular Expression Matching

Automata play important roles in wide area of computing and the growth of multicores calls for their efficient parallel implementation. Though it is known in theory that we can perform the computation of a finite automaton in parallel by simulating transitions, its implementation has a large overhead due to the simulation. In this paper we propose a new automaton called simultaneous finite automaton (SFA) for efficient parallel computation of an automaton. The key idea is to extend an automaton so that it involves the simulation of transitions. Since an SFA itself has a good property of parallelism, we can develop easily a parallel implementation without overheads. We have implemented a regular expression matcher based on SFA, and it has achieved over 10-times speedups on an environment with dual hexa-core CPUs in a typical case.Comment: This paper has been accepted at the following conference: 2013 International Conference on Parallel Processing (ICPP- 2013), October 1-4, 2013 Ecole Normale Suprieure de Lyon, Lyon, Franc

Decision Problems for Deterministic Pushdown Automata on Infinite Words

The article surveys some decidability results for DPDAs on infinite words (omega-DPDA). We summarize some recent results on the decidability of the regularity and the equivalence problem for the class of weak omega-DPDAs. Furthermore, we present some new results on the parity index problem for omega-DPDAs. For the specification of a parity condition, the states of the omega-DPDA are assigned priorities (natural numbers), and a run is accepting if the highest priority that appears infinitely often during a run is even. The basic simplification question asks whether one can determine the minimal number of priorities that are needed to accept the language of a given omega-DPDA. We provide some decidability results on variations of this question for some classes of omega-DPDAs.Comment: In Proceedings AFL 2014, arXiv:1405.527

Analyzing large-scale DNA Sequences on Multi-core Architectures

Rapid analysis of DNA sequences is important in preventing the evolution of different viruses and bacteria during an early phase, early diagnosis of genetic predispositions to certain diseases (cancer, cardiovascular diseases), and in DNA forensics. However, real-world DNA sequences may comprise several Gigabytes and the process of DNA analysis demands adequate computational resources to be completed within a reasonable time. In this paper we present a scalable approach for parallel DNA analysis that is based on Finite Automata, and which is suitable for analyzing very large DNA segments. We evaluate our approach for real-world DNA segments of mouse (2.7GB), cat (2.4GB), dog (2.4GB), chicken (1GB), human (3.2GB) and turkey (0.2GB). Experimental results on a dual-socket shared-memory system with 24 physical cores show speed-ups of up to 17.6x. Our approach is up to 3x faster than a pattern-based parallel approach that uses the RE2 library.Comment: The 18th IEEE International Conference on Computational Science and Engineering (CSE 2015), Porto, Portugal, 20 - 23 October 201

A Grammatical Inference Approach to Language-Based Anomaly Detection in XML

False-positives are a problem in anomaly-based intrusion detection systems. To counter this issue, we discuss anomaly detection for the eXtensible Markup Language (XML) in a language-theoretic view. We argue that many XML-based attacks target the syntactic level, i.e. the tree structure or element content, and syntax validation of XML documents reduces the attack surface. XML offers so-called schemas for validation, but in real world, schemas are often unavailable, ignored or too general. In this work-in-progress paper we describe a grammatical inference approach to learn an automaton from example XML documents for detecting documents with anomalous syntax. We discuss properties and expressiveness of XML to understand limits of learnability. Our contributions are an XML Schema compatible lexical datatype system to abstract content in XML and an algorithm to learn visibly pushdown automata (VPA) directly from a set of examples. The proposed algorithm does not require the tree representation of XML, so it can process large documents or streams. The resulting deterministic VPA then allows stream validation of documents to recognize deviations in the underlying tree structure or datatypes.Comment: Paper accepted at First Int. Workshop on Emerging Cyberthreats and Countermeasures ECTCM 201

Generalizing input-driven languages: theoretical and practical benefits

Regular languages (RL) are the simplest family in Chomsky's hierarchy. Thanks to their simplicity they enjoy various nice algebraic and logic properties that have been successfully exploited in many application fields. Practically all of their related problems are decidable, so that they support automatic verification algorithms. Also, they can be recognized in real-time. Context-free languages (CFL) are another major family well-suited to formalize programming, natural, and many other classes of languages; their increased generative power w.r.t. RL, however, causes the loss of several closure properties and of the decidability of important problems; furthermore they need complex parsing algorithms. Thus, various subclasses thereof have been defined with different goals, spanning from efficient, deterministic parsing to closure properties, logic characterization and automatic verification techniques. Among CFL subclasses, so-called structured ones, i.e., those where the typical tree-structure is visible in the sentences, exhibit many of the algebraic and logic properties of RL, whereas deterministic CFL have been thoroughly exploited in compiler construction and other application fields. After surveying and comparing the main properties of those various language families, we go back to operator precedence languages (OPL), an old family through which R. Floyd pioneered deterministic parsing, and we show that they offer unexpected properties in two fields so far investigated in totally independent ways: they enable parsing parallelization in a more effective way than traditional sequential parsers, and exhibit the same algebraic and logic properties so far obtained only for less expressive language families

Streamability of nested word transductions

We consider the problem of evaluating in streaming (i.e., in a single left-to-right pass) a nested word transduction with a limited amount of memory. A transduction T is said to be height bounded memory (HBM) if it can be evaluated with a memory that depends only on the size of T and on the height of the input word. We show that it is decidable in coNPTime for a nested word transduction defined by a visibly pushdown transducer (VPT), if it is HBM. In this case, the required amount of memory may depend exponentially on the height of the word. We exhibit a sufficient, decidable condition for a VPT to be evaluated with a memory that depends quadratically on the height of the word. This condition defines a class of transductions that strictly contains all determinizable VPTs

Memoization for Unary Logic Programming: Characterizing PTIME

We give a characterization of deterministic polynomial time computation based on an algebraic structure called the resolution semiring, whose elements can be understood as logic programs or sets of rewriting rules over first-order terms. More precisely, we study the restriction of this framework to terms (and logic programs, rewriting rules) using only unary symbols. We prove it is complete for polynomial time computation, using an encoding of pushdown automata. We then introduce an algebraic counterpart of the memoization technique in order to show its PTIME soundness. We finally relate our approach and complexity results to complexity of logic programming. As an application of our techniques, we show a PTIME-completeness result for a class of logic programming queries which use only unary function symbols.Comment: Soumis {\`a} LICS 201

Automata learning algorithms and processes for providing more complete systems requirements specification by scenario generation, CSP-based syntax-oriented model construction, and R2D2C system requirements transformation

Systems, methods and apparatus are provided through which in some embodiments, automata learning algorithms and techniques are implemented to generate a more complete set of scenarios for requirements based programming. More specifically, a CSP-based, syntax-oriented model construction, which requires the support of a theorem prover, is complemented by model extrapolation, via automata learning. This may support the systematic completion of the requirements, the nature of the requirement being partial, which provides focus on the most prominent scenarios. This may generalize requirement skeletons by extrapolation and may indicate by way of automatically generated traces where the requirement specification is too loose and additional information is required