A Power-Efficient Methodology for Mapping Applications on Multi-Processor System-on-Chip Architectures

This work introduces an application mapping methodology and case study for multi-processor on-chip architectures. Starting from the description of an application in standard sequential code (e.g. in C), first the application is profiled, parallelized when possible, then its components are moved to hardware implementation when necessary to satisfy performance and power constraints. After mapping, with the use of hardware objects to handle concurrency, the application power consumption can be further optimized by a task-based scheduler for the remaining software part, without the need for operating system support. The key contributions of this work are: a methodology for high-level hardware/software partitioning that allows the designer to use the same code for both hardware and software models for simulation, providing nevertheless preliminary estimations for timing and power consumption; and a task-based scheduling algorithm that does not require operating system support. The methodology has been applied to the co-exploration of an industrial case study: an MPEG4 VGA real-time encoder

QoS-aware predictive workflow scheduling

This research places the basis of QoS-aware predictive workflow scheduling. This research novel contributions will open up prospects for future research in handling complex big workflow applications with high uncertainty and dynamism. The results from the proposed workflow scheduling algorithm shows significant improvement in terms of the performance and reliability of the workflow applications

Multilevel Parallel Communications

The research reported in this thesis investigates the use of parallelism at multiple levels to realize high-speed networks that offer advantages in throughput, cost, reliability, and flexibility over alternative approaches. This research specifically considers use of parallelism at two levels: the upper level and the lower level. At the upper level, N protocol processors perform functions included in the transport and network layers. At the lower level, M channels provide data and physical layer functions. The resulting system provides very high bandwidth to an application. A key concept of this research is the use of replicated channels to provide a single, high bandwidth channel to a single application. The parallelism provided by the network is transparent to communicating applications, thus differentiating this strategy from schemes that provide a collection of disjoint channels between applications on different nodes. Another innovative aspect of this research is that parallelism is exploited at multiple layers of the network to provide high throughput not only at the physical layer, but also at upper protocol layers. Schedulers are used to distribute data from a single stream to multiple channels and to merge data from multiple channels to reconstruct a single coherent stream. High throughput is possible by providing the combined bandwidth of multiple channels to a single source and destination through use of parallelism at multiple protocol layers. This strategy is cost effective since systems can be built using standard technologies that benefit from the economies of a broad applications base. The exotic and revolutionary components needed in non-parallel approaches to build high speed networks are not required. The replicated channels can be used to achieve high reliability as well. Multilevel parallelism is flexible since the degree of parallelism provided at any level can be matched to protocol processing demands and application requirements

Providing QoS with Reduced Energy Consumption via Real-Time Voltage Scaling on Embedded Systems

Low energy consumption has emerged as one of the most important design objectives for many modern embedded systems, particularly the battery-operated PDAs. For some soft real-time applications such as multimedia applications, occasional deadline misses can be tolerated. How to leverage this feature to save more energy while still meeting the user required quality of service (QoS) is the research topic this thesis focuses on. We have proposed a new probabilistic design methodology, a set of energy reduction techniques for single and multiple processor systems by using dynamic voltage scaling (DVS), the practical solutions to voltage set-up problem for multiple voltage DVS system, and a new QoS metric. Most present design space exploration techniques, which are based on application's worst case execution time, often lead to over-designing systems. We have proposed the probabilistic design methodology for soft real-time embedded systems by using detailed execution time information in order to reduce the system resources while delivering the user required QoS probabilistically. One important phase in the probabilistic design methodology is the offline/online resource management. As an example, we have proposed a set of energy reduction techniques by employing DVS techniques to exploit the slacks arising from the tolerance to deadline misses for single and multiple processor systems while meeting the user required completion ratio statistically. Multiple-voltage DVS system is predicted as the future low-power system by International Technology Roadmap for Semiconductors (ITRS). In order to find the best way to employ DVS, we have formulated the voltage set-up problem and provided its practical solutions that seek the most energy efficient voltage setting for the design of multiple-voltage DVS systems. We have also presented a case study in designing energy-efficient dual voltage soft real-time system with (m, k)-firm deadline guarantee. Although completion ratio is widely used as a QoS metric, it can only be applied to the applications with independent tasks. We have proposed a new QoS metric that differentiates firm and soft deadlines and considers the task dependency as well. Based on this new metric, we have developed a set of online scheduling algorithms that enhance quality of presentation (QoP) significantly, particularly for overloaded systems

Some paradigms for visualizing parallel execution of logic programs

This paper addresses the design of visual paradigms for observing the parallel execution of logic programs. First, an intuitive method is proposed for arriving at the design of a paradigm and its implementation as a tool for a given model of parallelism. This method is based on stepwise reñnement starting from the deñnition of basic notions such as events and observables and some precedence relationships among events which hold for the given model of parallelism. The method is then applied to several types of parallel execution models for logic programs (Orparallelism, Determinate Dependent And parallelism, Restricted and-parallelism) for which visualization paradigms are designed. Finally, VisAndOr, a tool which implements all of these paradigms is presented, together with a discussion of its usefulness through examples

High Performance Computing for DNA Sequence Alignment and Assembly

Recent advances in DNA sequencing technology have dramatically increased the scale and scope of DNA sequencing. These data are used for a wide variety of important biological analyzes, including genome sequencing, comparative genomics, transcriptome analysis, and personalized medicine but are complicated by the volume and complexity of the data involved. Given the massive size of these datasets, computational biology must draw on the advances of high performance computing. Two fundamental computations in computational biology are read alignment and genome assembly. Read alignment maps short DNA sequences to a reference genome to discover conserved and polymorphic regions of the genome. Genome assembly computes the sequence of a genome from many short DNA sequences. Both computations benefit from recent advances in high performance computing to efficiently process the huge datasets involved, including using highly parallel graphics processing units (GPUs) as high performance desktop processors, and using the MapReduce framework coupled with cloud computing to parallelize computation to large compute grids. This dissertation demonstrates how these technologies can be used to accelerate these computations by orders of magnitude, and have the potential to make otherwise infeasible computations practical

Design and resource management of reconfigurable multiprocessors for data-parallel applications

FPGA (Field-Programmable Gate Array)-based custom reconfigurable computing machines have established themselves as low-cost and low-risk alternatives to ASIC (Application-Specific Integrated Circuit) implementations and general-purpose microprocessors in accelerating a wide range of computation-intensive applications. Most often they are Application Specific Programmable Circuiits (ASPCs), which are developer programmable instead of user programmable. The major disadvantages of ASPCs are minimal programmability, and significant time and energy overheads caused by required hardware reconfiguration when the problem size outnumbers the available reconfigurable resources; these problems are expected to become more serious with increases in the FPGA chip size. On the other hand, dominant high-performance computing systems, such as PC clusters and SMPs (Symmetric Multiprocessors), suffer from high communication latencies and/or scalability problems. This research introduces low-cost, user-programmable and reconfigurable MultiProcessor-on-a-Programmable-Chip (MPoPC) systems for high-performance, low-cost computing. It also proposes a relevant resource management framework that deals with performance, power consumption and energy issues. These semi-customized systems reduce significantly runtime device reconfiguration by employing userprogrammable processing elements that are reusable for different tasks in large, complex applications. For the sake of illustration, two different types of MPoPCs with hardware FPUs (floating-point units) are designed and implemented for credible performance evaluation and modeling: the coarse-grain MIMD (Multiple-Instruction, Multiple-Data) CG-MPoPC machine based on a processor IP (Intellectual Property) core and the mixed-mode (MIMD, SIMD or M-SIMD) variant-grain HERA (HEterogeneous Reconfigurable Architecture) machine. In addition to alleviating the above difficulties, MPoPCs can offer several performance and energy advantages to our data-parallel applications when compared to ASPCs; they are simpler and more scalable, and have less verification time and cost. Various common computation-intensive benchmark algorithms, such as matrix-matrix multiplication (MMM) and LU factorization, are studied and their parallel solutions are shown for the two MPoPCs. The performance is evaluated with large sparse real-world matrices primarily from power engineering. We expect even further performance gains on MPoPCs in the near future by employing ever improving FPGAs. The innovative nature of this work has the potential to guide research in this arising field of high-performance, low-cost reconfigurable computing. The largest advantage of reconfigurable logic lies in its large degree of hardware customization and reconfiguration which allows reusing the resources to match the computation and communication needs of applications. Therefore, a major effort in the presented design methodology for mixed-mode MPoPCs, like HERA, is devoted to effective resource management. A two-phase approach is applied. A mixed-mode weighted Task Flow Graph (w-TFG) is first constructed for any given application, where tasks are classified according to their most appropriate computing mode (e.g., SIMD or MIMD). At compile time, an architecture is customized and synthesized for the TFG using an Integer Linear Programming (ILP) formulation and a parameterized hardware component library. Various run-time scheduling schemes with different performanceenergy objectives are proposed. A system-level energy model for HERA, which is based on low-level implementation data and run-time statistics, is proposed to guide performance-energy trade-off decisions. A parallel power flow analysis technique based on Newton\u27s method is proposed and employed to verify the methodology