A 2D convolutional neural network to detect sleep apnea in children using airflow and oximetry

Producción CientíficaThe gold standard approach to diagnose obstructive sleep apnea (OSA) in children is overnight in-lab polysomnography (PSG), which is labor-intensive for clinicians and onerous to healthcare systems and families. Simplification of PSG should enhance availability and comfort, and reduce complexity and waitlists. Airflow (AF) and oximetry (SpO2) signals summarize most of the information needed to detect apneas and hypopneas, but automatic analysis of these signals using deep-learning algorithms has not been extensively investigated in the pediatric context. The aim of this study was to evaluate a convolutional neural network (CNN) architecture based on these two signals to estimate the severity of pediatric OSA. PSG-derived AF and SpO2 signals from the Childhood Adenotonsillectomy Trial (CHAT) database (1638 recordings), as well as from a clinical database (974 recordings), were analyzed. A 2D CNN fed with AF and SpO2 signals was implemented to estimate the number of apneic events, and the total apnea-hypopnea index (AHI) was estimated. A training-validation-test strategy was used to train the CNN, adjust the hyperparameters, and assess the diagnostic ability of the algorithm, respectively. Classification into four OSA severity levels (no OSA, mild, moderate, or severe) reached 4-class accuracy and Cohen's Kappa of 72.55% and 0.6011 in the CHAT test set, and 61.79% and 0.4469 in the clinical dataset, respectively. Binary classification accuracy using AHI cutoffs 1, 5 and 10 events/h ranged between 84.64% and 94.44% in CHAT, and 84.10%–90.26% in the clinical database. The proposed CNN-based architecture achieved high diagnostic ability in two independent databases, outperforming previous approaches that employed SpO2 signals alone, or other classical feature-engineering approaches. Therefore, analysis of AF and SpO2 signals using deep learning can be useful to deploy reliable computer-aided diagnostic tools for childhood OSA.Ministerio de Ciencia, Innovación y Universidades - Agencia Estatal de Investigación (project 10.13039/501100011033)Fondo Europeo de Desarrollo Regional - Unión Europea (projects PID2020-115468RB-I00 and PDC2021-120775-I00)Sociedad Española de Neumología y Cirugía Torácica (project 649/2018)Sociedad Española de Sueño (project Beca de Investigación SES 2019)Consorcio Centro de Investigación Biomédica en Red - Instituto de Salud Carlos III - Ministerio de Ciencia, Innovación y Universidades (project CB19/01/00012)National Institutes of Health (projects HL083075, HL083129, UL1-RR-024134 and UL1 RR024989)National Heart, Lung, and Blood Institute (projects R24 HL114473 and 75N92019R002)Ministerio de Educación, Cultura y Deporte (grant FPU16/02938)Ministerio de Ciencia, Innovación y Universidades - Agencia Estatal de Investigación - Fondo Social Europeo (grant RYC2019-028566-I)National Institutes of Health (grants HL130984, HL140548, and AG061824

A Systematic Review of Detecting Sleep Apnea Using Deep Learning

Sleep apnea is a sleep related disorder that significantly affects the population. Polysomnography, the gold standard, is expensive, inaccessible, uncomfortable and an expert technician is needed to score. Numerous researchers have proposed and implemented automatic scoring processes to address these issues, based on fewer sensors and automatic classification algorithms. Deep learning is gaining higher interest due to database availability, newly developed techniques, the possibility of producing machine created features and higher computing power that allows the algorithms to achieve better performance than the shallow classifiers. Therefore, the sleep apnea research has currently gained significant interest in deep learning. The goal of this work is to analyze the published research in the last decade, providing an answer to the research questions such as how to implement the different deep networks, what kind of pre-processing or feature extraction is needed, and the advantages and disadvantages of different kinds of networks. The employed signals, sensors, databases and implementation challenges were also considered. A systematic search was conducted on five indexing services from 2008–2018. A total of 255 papers were found and 21 were selected by considering the inclusion and exclusion criteria, using the preferred reporting items for systematic reviews and meta-analyses (PRISMA) approach.info:eu-repo/semantics/publishedVersio

Characterization and processing of novel neck photoplethysmography signals for cardiorespiratory monitoring

Epilepsy is a neurological disorder causing serious brain seizures that severely affect the patients' quality of life. Sudden unexpected death in epilepsy (SUDEP), for which no evident decease reason is found after post-mortem examination, is a common cause of mortality. The mechanisms leading to SUDEP are uncertain, but, centrally mediated apneic respiratory dysfunction, inducing dangerous hypoxemia, plays a key role. Continuous physiological monitoring appears as the only reliable solution for SUDEP prevention. However, current seizure-detection systems do not show enough sensitivity and present a high number of intolerable false alarms. A wearable system capable of measuring several physiological signals from the same body location, could efficiently overcome these limitations. In this framework, a neck wearable apnea detection device (WADD), sensing airflow through tracheal sounds, was designed. Despite the promising performance, it is still necessary to integrate an oximeter sensor into the system, to measure oxygen saturation in blood (SpO2) from neck photoplethysmography (PPG) signals, and hence, support the apnea detection decision. The neck is a novel PPG measurement site that has not yet been thoroughly explored, due to numerous challenges. This research work aims to characterize neck PPG signals, in order to fully exploit this alternative pulse oximetry location, for precise cardiorespiratory biomarkers monitoring. In this thesis, neck PPG signals were recorded, for the first time in literature, in a series of experiments under different artifacts and respiratory conditions. Morphological and spectral characteristics were analyzed in order to identify potential singularities of the signals. The most common neck PPG artifacts critically corrupting the signal quality, and other breathing states of interest, were thoroughly characterized in terms of the most discriminative features. An algorithm was further developed to differentiate artifacts from clean PPG signals. Both, the proposed characterization and classification model can be useful tools for researchers to denoise neck PPG signals and exploit them in a variety of clinical contexts. In addition to that, it was demonstrated that the neck also offered the possibility, unlike other body parts, to extract the Jugular Venous Pulse (JVP) non-invasively. Overall, the thesis showed how the neck could be an optimum location for multi-modal monitoring in the context of diseases affecting respiration, since it not only allows the sensing of airflow related signals, but also, the breathing frequency component of the PPG appeared more prominent than in the standard finger location. In this context, this property enabled the extraction of relevant features to develop a promising algorithm for apnea detection in near-real time. These findings could be of great importance for SUDEP prevention, facilitating the investigation of the mechanisms and risk factors associated to it, and ultimately reduce epilepsy mortality.Open Acces

수면 호흡음을 이용한 폐쇄성 수면 무호흡 중증도 분류

학위논문 (박사)-- 서울대학교 융합과학기술대학원 융합과학부, 2017. 8. 이교구.Obstructive sleep apnea (OSA) is a common sleep disorder. The symptom has a high prevalence and increases mortality as a risk factor for hypertension and stroke. Sleep disorders occur during sleep, making it difficult for patients to self-perceive themselves, and the actual diagnosis rate is low. Despite the existence of a standard sleep study called a polysomnography (PSG), it is difficult to diagnose the sleep disorders due to complicated test procedures and high medical cost burdens. Therefore, there is an increasing demand for an effective and rational screening test that can determine whether or not to undergo a PSG. In this thesis, we conducted three studies to classify the snoring sounds and OSA severity using only breathing sounds during sleep without additional biosensors. We first identified the classification possibility of snoring sounds related to sleep disorders using the features based on the cyclostationary analysis. Then, we classified the patients OSA severity with the features extracted using temporal and cyclostationary analysis from long-term sleep breathing sounds. Finally, the partial sleep sound extraction, and feature learning process using a convolutional neural network (CNN, or ConvNet) were applied to improve the efficiency and performance of previous snoring sound and OSA severity classification tasks. The sleep breathing sound analysis method using a CNN showed superior classification accuracy of more than 80% (average area under curve > 0.8) in multiclass snoring sounds and OSA severity classification tasks. The proposed analysis and classification method is expected to be used as a screening tool for improving the efficiency of PSG in the future customized healthcare service.Chapter 1. Introduction ................................ .......................1 1.1 Personal healthcare in sleep ................................ ..............1 1.2 Existing approaches and limitations ....................................... 9 1.3 Clinical information related to SRBD ................................ .. ..12 1.4 Study objectives ................................ .........................16 Chapter 2. Overview of Sleep Research using Sleep Breathing Sounds ........... 23 2.1 Previous goals of studies ................................ ................23 2.2 Recording environments and related configurations ........................ 24 2.3 Sleep breathing sound analysis ................................ ...........27 2.4 Sleep breathing sound classification ..................................... 35 2.5 Current limitations ................................ ......................36 Chapter 3. Multiple SRDB-related Snoring Sound Classification .................39 3.1 Introduction ................................ .............................39 3.2 System architecture ................................ ......................41 3.3 Evaluation ................................ ...............................52 3.4 Results ................................ ..................................55 3.5 Discussion ................................ ...............................59 3.6 Summary ................................ ..................................63 Chapter 4. Patients OSA Severity Classification .............................65 4.1 Introduction ................................ .............................65 4.2 Existing Approaches ................................ ......................69 4.3 System Architecture ................................ ......................70 4.4 Evaluation ................................ ...............................85 4.5 Results ................................ ..................................87 4.6 Discussion ................................ ...............................94 4.7 Summary ................................ ..................................97 Chapter 5. Patient OSA Severity Prediction using Deep Learning Techniques .....99 5.1 Introduction ................................ .............................99 5.2 Methods ................................ ..................................101 5.3 Results ................................ ..................................109 5.4 Discussion ................................ ...............................115 5.5 Summary ................................ ..................................118 Chapter 6. Conclusions and Future Work ........................................120 6.1 Conclusions ................................ ..............................120 6.2 Future work ................................ ..............................127Docto

Aplicación de técnicas de deep learning para clasificar los eventos de apnea e hipopnea mediante las señales de pulsioximetría

La apnea obstructiva del sueño (AOS) es una patología de gran prevalencia en la población general con graves repercusiones para la calidad de vida de las personas que la padecen. Está directamente relacionada con el desarrollo de enfermedades cardiovasculares, además de aumentar el riesgo de accidentes de tráfico y la tasa de mortalidad. A pesar de que la polisomnografía nocturna es reconocida como el gold standard para el diagnóstico de la AOS, presenta una serie de limitaciones significativas. Se trata de una prueba con un elevado coste económico, laboriosa y no siempre accesible, aparte de ser incómoda para los pacientes al tener que dormir una noche fuera de sus domicilios particulares conectados a múltiples sensores. Ante estos inconvenientes, la comunidad científica ha explorado diversas alternativas para ayudar en el diagnóstico de la AOS. Entre ellas se encuentra la pulsioximetría, una técnica simple, fiable y accesible que registra las señales de saturación de oxígeno (SpO2) y frecuencia de pulso (PR), las cuales contienen información acerca de los episodios de hipoxemia intermitente, normalmente asociados con la aparición de eventos de apnea e hipopnea.Grado en Ingeniería Biomédic

ARTIFICIAL INTELLIGENCE-ENABLED EDGE-CENTRIC SOLUTION FOR AUTOMATED ASSESSMENT OF SLEEP USING WEARABLES IN SMART HEALTH

ARTIFICIAL INTELLIGENCE-ENABLED EDGE-CENTRIC SOLUTION FOR AUTOMATED ASSESSMENT OF SLEEP USING WEARABLES IN SMART HEALT