Automata and rational expressions

This text is an extended version of the chapter 'Automata and rational expressions' in the AutoMathA Handbook that will appear soon, published by the European Science Foundation and edited by JeanEricPin

Sound and complete axiomatizations of coalgebraic language equivalence

Coalgebras provide a uniform framework to study dynamical systems, including several types of automata. In this paper, we make use of the coalgebraic view on systems to investigate, in a uniform way, under which conditions calculi that are sound and complete with respect to behavioral equivalence can be extended to a coarser coalgebraic language equivalence, which arises from a generalised powerset construction that determinises coalgebras. We show that soundness and completeness are established by proving that expressions modulo axioms of a calculus form the rational fixpoint of the given type functor. Our main result is that the rational fixpoint of the functor $FT$, where $T$ is a monad describing the branching of the systems (e.g. non-determinism, weights, probability etc.), has as a quotient the rational fixpoint of the "determinised" type functor $\bar F$, a lifting of $F$ to the category of $T$-algebras. We apply our framework to the concrete example of weighted automata, for which we present a new sound and complete calculus for weighted language equivalence. As a special case, we obtain non-deterministic automata, where we recover Rabinovich's sound and complete calculus for language equivalence.Comment: Corrected version of published journal articl

Towards a Uniform Theory of Effectful State Machines

Using recent developments in coalgebraic and monad-based semantics, we present a uniform study of various notions of machines, e.g. finite state machines, multi-stack machines, Turing machines, valence automata, and weighted automata. They are instances of Jacobs' notion of a T-automaton, where T is a monad. We show that the generic language semantics for T-automata correctly instantiates the usual language semantics for a number of known classes of machines/languages, including regular, context-free, recursively-enumerable and various subclasses of context free languages (e.g. deterministic and real-time ones). Moreover, our approach provides new generic techniques for studying the expressivity power of various machine-based models.Comment: final version accepted by TOC

Parametrized Stochastic Grammars for RNA Secondary Structure Prediction

We propose a two-level stochastic context-free grammar (SCFG) architecture for parametrized stochastic modeling of a family of RNA sequences, including their secondary structure. A stochastic model of this type can be used for maximum a posteriori estimation of the secondary structure of any new sequence in the family. The proposed SCFG architecture models RNA subsequences comprising paired bases as stochastically weighted Dyck-language words, i.e., as weighted balanced-parenthesis expressions. The length of each run of unpaired bases, forming a loop or a bulge, is taken to have a phase-type distribution: that of the hitting time in a finite-state Markov chain. Without loss of generality, each such Markov chain can be taken to have a bounded complexity. The scheme yields an overall family SCFG with a manageable number of parameters.Comment: 5 pages, submitted to the 2007 Information Theory and Applications Workshop (ITA 2007

Computation of distances for regular and context-free probabilistic languages

Several mathematical distances between probabilistic languages have been investigated in the literature, motivated by applications in language modeling, computational biology, syntactic pattern matching and machine learning. In most cases, only pairs of probabilistic regular languages were considered. In this paper we extend the previous results to pairs of languages generated by a probabilistic context-free grammar and a probabilistic finite automaton.PostprintPeer reviewe

26. Theorietag Automaten und Formale Sprachen 23. Jahrestagung Logik in der Informatik: Tagungsband

Der Theorietag ist die Jahrestagung der Fachgruppe Automaten und Formale Sprachen der Gesellschaft für Informatik und fand erstmals 1991 in Magdeburg statt. Seit dem Jahr 1996 wird der Theorietag von einem eintägigen Workshop mit eingeladenen Vorträgen begleitet. Die Jahrestagung der Fachgruppe Logik in der Informatik der Gesellschaft für Informatik fand erstmals 1993 in Leipzig statt. Im Laufe beider Jahrestagungen finden auch die jährliche Fachgruppensitzungen statt. In diesem Jahr wird der Theorietag der Fachgruppe Automaten und Formale Sprachen erstmalig zusammen mit der Jahrestagung der Fachgruppe Logik in der Informatik abgehalten. Organisiert wurde die gemeinsame Veranstaltung von der Arbeitsgruppe Zuverlässige Systeme des Instituts für Informatik an der Christian-Albrechts-Universität Kiel vom 4. bis 7. Oktober im Tagungshotel Tannenfelde bei Neumünster. Während des Tre↵ens wird ein Workshop für alle Interessierten statt finden. In Tannenfelde werden • Christoph Löding (Aachen) • Tomás Masopust (Dresden) • Henning Schnoor (Kiel) • Nicole Schweikardt (Berlin) • Georg Zetzsche (Paris) eingeladene Vorträge zu ihrer aktuellen Arbeit halten. Darüber hinaus werden 26 Vorträge von Teilnehmern und Teilnehmerinnen gehalten, 17 auf dem Theorietag Automaten und formale Sprachen und neun auf der Jahrestagung Logik in der Informatik. Der vorliegende Band enthält Kurzfassungen aller Beiträge. Wir danken der Gesellschaft für Informatik, der Christian-Albrechts-Universität zu Kiel und dem Tagungshotel Tannenfelde für die Unterstützung dieses Theorietags. Ein besonderer Dank geht an das Organisationsteam: Maike Bradler, Philipp Sieweck, Joel Day. Kiel, Oktober 2016 Florin Manea, Dirk Nowotka und Thomas Wilk