Reconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism

We investigate the ability of algorithms developed for reverse engineering of transcriptional regulatory networks to reconstruct metabolic networks from high-throughput metabolite profiling data. For this, we generate synthetic metabolic profiles for benchmarking purposes based on a well-established model for red blood cell metabolism. A variety of data sets is generated, accounting for different properties of real metabolic networks, such as experimental noise, metabolite correlations, and temporal dynamics. These data sets are made available online. We apply ARACNE, a mainstream transcriptional networks reverse engineering algorithm, to these data sets and observe performance comparable to that obtained in the transcriptional domain, for which the algorithm was originally designed.Comment: 14 pages, 3 figures. Presented at the DIMACS Workshop on Dialogue on Reverse Engineering Assessment and Methods (DREAM), Sep 200

Spatiotemporal neurodynamics of automatic temporal expectancy in 9-month old infants

open2noAnticipating events occurrence (Temporal Expectancy) is a crucial capacity for survival. Yet, there is little evidence about the presence of cortical anticipatory activity from infancy. In this study we recorded the High-density electrophysiological activity in 9 month-old infants and adults undergoing an audio-visual S1-S2 paradigm simulating a lifelike "Peekaboo" game inducing automatic temporal expectancy of smiling faces. The results indicate in the S2-preceding Contingent Negative Variation (CNV) an early electrophysiological signature of expectancy-based anticipatory cortical activity. Moreover, the progressive CNV amplitude increasing across the task suggested that implicit temporal rule learning is at the basis of expectancy building-up over time. Cortical source reconstruction suggested a common CNV generator between adults and infants in the right prefrontal cortex. The decrease in the activity of this area across the task (time-on-task effect) further implied an early, core role of this region in implicit temporal rule learning. By contrast, a time-on-task activity boost was found in the supplementary motor area (SMA) in adults and in the temporoparietal regions in infants. Altogether, our findings suggest that the capacity of the human brain to translate temporal predictions into anticipatory neural activity emerges ontogenetically early, although the underlying spatiotemporal cortical dynamics change across development. © 2016 The Author(s).openMento, Giovanni; Valenza, EloisaMento, Giovanni; Valenza, Elois

Emotional Processes in Elaborating a Historical Trauma in the Daily Press

Twentieth century has witnessed several cases of mass traumatization when groups as wholes were ostracized even threated with annihilation. From the perspectives of identity trauma, when harms are afflicted to a group of people by other groups because of their categorical membership, ethnic and national traumas stand out. This paper aims to investigate long-term consequences of permanent traumatization on national identity with presenting a narrative social psychological study as a potential way of empirical exploration of the processes of collective traumatization and trauma elaboration. A Narrative Trauma Elaboration Model has been introduced which identifies linguistic markers of the elaboration process. Newspaper articles (word count = 203172) about a significant national trauma of the Hungarian history, Treaty of Trianon (1920), were chosen from a ninety year time span and emotional expressions of narratives were analysed with a narrative categorical content analytic tool (NarrCat). Longitudinal pattern of data show very weak emotional processing of the traumatic event. Results are discussed in terms of collective victimhood as core element of national identity and its effects on trauma elaboration

Dissociation of sensitivity to spatial frequency in word and face preferential areas of the fusiform gyrus

Different cortical regions within the ventral occipitotemporal junction have been reported to show preferential responses to particular objects. Thus, it is argued that there is evidence for a left-lateralized visual word form area and a right-lateralized fusiform face area, but the unique specialization of these areas remains controversial. Words are characterized by greater power in the high spatial frequency (SF) range, whereas faces comprise a broader range of high and low frequencies. We investigated how these high-order visual association areas respond to simple sine-wave gratings that varied in SF. Using functional magnetic resonance imaging, we demonstrated lateralization of activity that was concordant with the low-level visual property of words and faces; left occipitotemporal cortex is more strongly activated by high than by low SF gratings, whereas the right occipitotemporal cortex responded more to low than high spatial frequencies. Therefore, the SF of a visual stimulus may bias the lateralization of processing irrespective of its higher order properties