Imaging spectrometry-derived estimates of regional ecosystem composition for the Sierra Nevada, California

The composition of the plant canopy is a key attribute of terrestrial ecosystems, influencing the fluxes of carbon, water, and energy between the land surface and the atmosphere. Terrestrial ecosystem and biosphere models, which are used to predict how ecosystems are expected to respond to changes in climate, atmospheric CO2, and land-use change, require accurate representations of plant canopy composition at large spatial scales. The ability to accurately specify plant canopy composition is important because it determines the physiological and ecological properties of plants (such as leaf photosynthetic capacity, patterns of plant carbon allocation and tissue turnover, and the resulting dynamics of plant demography) that govern the biophysical and biogeochemical functioning of ecosystems. Traditionally, plant canopy composition has been represented in a coarse-grained manner within terrestrial biosphere models, with ecosystems being comprised of a single plant functional type (PFT). However, models are increasingly seeking to represent fine-scale spatial variation in plant functional diversity. In this study, we show how imaging spectrometry measurements can provide spatially-comprehensive estimates of within-biome heterogeneity in PFT composition across a functionally diverse and topographically heterogeneous ~710 km2 area in the Southern Sierra Mountains of California. AVIRIS (Airborne Visible Infrared Imaging Spectrometer) data at 18 m resolution from the recent HyspIRI Preparatory Mission (Hyperspectral InfraRed Imager) were used to estimate the sub-pixel fractions of seven PFTs represented in the ED2 terrestrial biosphere model: Shrub, Oak, Western Hardwood, Western Pine, Cedar/Fir, and High-elevation Pine, plus a Grass/NPV (Non-Photosynthetic Vegetation) fraction using Multiple Endmember Spectral Mixture Analysis (MESMA). ED2 is an individual-based terrestrial biosphere model capable of representing fine-scale sub-pixel ecosystem heterogeneity. Our results show that this methodology captures important elevation-related shifts in canopy composition that occur within the study area that are not resolved by existing multi-spectral land-cover products. These estimates modestly improved when the putative PFT endmembers considered in the mixture analysis were constrained using available geospatial data about the presence and absence of the PFTs in particular areas: the average RMSEs (root-mean-square errors) with the geospatially-constrained versus conventional method were 11.3% and 11.9% respectively, with larger reductions in the bias (i.e. mean error) in the abundances of Oak, Cedar/Fir, and Western Hardwood PFTs (ranging from 2.0% to 7.8%). At the hectare scale around four flux towers in the Southern Sierra Mountains, the overall composition improved from an RMSE of 18.2% (5.0-24.2% for individual PFTs) to RMSE 9.5% (3.3-13.2% for individual PFTs). Downgrading AVIRIS to 30 m resolution resulted in a reduction in accuracy of the constrained method to an RMSE of 12.7% (0-23.7%) with < 1% change in bias for all tree and shrub PFTs. Our results demonstrate that imaging spectrometry measurements from planned satellite missions such as HyspIRI, EnMAP (Environmental Mapping and Analysis Program), and HISUI (Hyper-spectral Imager SUIte) can provide important and much-needed information about fine-scale heterogeneity in the composition of plant canopies for constraining and improving terrestrial ecosystem and biosphere model simulations of regional- and global-scale vegetation dynamics and function

Applications of Satellite Earth Observations section - NEODAAS: Providing satellite data for efficient research

The NERC Earth Observation Data Acquisition and Analysis Service (NEODAAS) provides a central point of Earth Observation (EO) satellite data access and expertise for UK researchers. The service is tailored to individual users’ requirements to ensure that researchers can focus effort on their science, rather than struggling with correct use of unfamiliar satellite data

Satellite monitoring of harmful algal blooms (HABs) to protect the aquaculture industry

Harmful algal blooms (HABs) can cause sudden and considerable losses to fish farms, for example 500,000 salmon during one bloom in Shetland, and also present a threat to human health. Early warning allows the industry to take protective measures. PML's satellite monitoring of HABs is now funded by the Scottish aquaculture industry. The service involves processing EO ocean colour data from NASA and ESA in near-real time, and applying novel techniques for discriminating certain harmful blooms from harmless algae. Within the AQUA-USERS project we are extending this capability to further HAB species within several European countries

Hyperspectral Imaging for Fine to Medium Scale Applications in Environmental Sciences

The aim of the Special Issue “Hyperspectral Imaging for Fine to Medium Scale Applications in Environmental Sciences” was to present a selection of innovative studies using hyperspectral imaging (HSI) in different thematic fields. This intention reflects the technical developments in the last three decades, which have brought the capacity of HSI to provide spectrally, spatially and temporally detailed data, favoured by e.g., hyperspectral snapshot technologies, miniaturized hyperspectral sensors and hyperspectral microscopy imaging. The present book comprises a suite of papers in various fields of environmental sciences—geology/mineral exploration, digital soil mapping, mapping and characterization of vegetation, and sensing of water bodies (including under-ice and underwater applications). In addition, there are two rather methodically/technically-oriented contributions dealing with the optimized processing of UAV data and on the design and test of a multi-channel optical receiver for ground-based applications. All in all, this compilation documents that HSI is a multi-faceted research topic and will remain so in the future

Mapping urban surface materials using imaging spectroscopy data

Die Kartierung der städtische Oberflächenmaterialien ist aufgrund der komplexen räumlichen Muster eine Herausforderung. Daten von bildgebenden Spektrometern können hierbei durch die feine und kontinuierliche Abtastung des elektromagnetischen Spektrums detaillierte spektrale Merkmale von Oberflächenmaterialien erkennen, was mit multispektralen oder RGB-Bildern nicht mit der gleichen Genauigkeit erreicht werden kann. Bislang wurden in zahlreichen Studien zur Kartierung von städtischen Oberflächenmaterialien Daten von flugzeuggestützten abbildenden Spektrometern mit hoher räumlicher Auflösung verwendet, die ihr Potenzial unter Beweis stellen und gute Ergebnisse liefern. Im Vergleich zu diesen Sensoren haben weltraumgestützte abbildende Spektrometer eine regionale oder globale Abdeckung, eine hohe Wiederholbarkeit und vermeiden teure, zeit- und arbeitsaufwändige Flugkampagnen. Allerdings liegt die räumliche Auflösung der aktuellen weltraumgestützten abbildenden Spektroskopiedaten bei etwa 30 m, was zu einem Mischpixelproblem führt, welches mit herkömmlichen Kartierungsansätzen nur schwer zu bewältigen ist. Das Hauptziel dieser Studie ist die Kartierung städtischer Materialien mit bildgebenden Spektroskopiedaten in verschiedenen Maßstäben und die gleichzeitige Nutzung des Informationsgehalts dieser Daten, um die chemischen und physikalischen Eigenschaften von Oberflächenmaterialien zu erfassen sowie das Mischpixelproblem zu berücksichtigen. Konkret zielt diese Arbeit darauf ab, (1) photovoltaische Solarmodule mit Hilfe von luftgestützten bildgebenden Spektroskopiedaten auf der Grundlage ihrer spektralen Merkmale zu kartieren; (2) die Robustheit der Stichprobe von städtischen Materialgradienten zu untersuchen; (3) die Übertragbarkeit von städtischen Materialgradienten auf andere Gebiete zu analysieren.Mapping urban surface materials is challenging due to the complex spatial patterns. Data from imaging spectrometers can identify detailed spectral features of surface materials through the fine and continuous sampling of the electromagnetic spectrum, which cannot be achieved with the same accuracy using multispectral or RGB images. To date, numerous studies in urban surface material mapping have been using data from airborne imaging spectrometers with high spatial resolution, demonstrating the potential and providing good results. Compared to these sensors, spaceborne imaging spectrometers have regional or global coverage, high repeatability, and avoid expensive, time-consuming, and labor-intensive flight campaigns. However, the spatial resolution of current spaceborne imaging spectroscopy data (also known as hyperspectral data) is about 30 m, resulting in a mixed pixel problem that is challenging to handle with conventional mapping approaches. The main objective of this study is to perform urban surface material mapping with imaging spectroscopy data at different spatial scales, simultaneously explore the information content of these data to detect the chemical and physical properties of surface materials, and take the mixed-pixel problem into account. Specifically, this thesis aims to (1) map solar photovoltaic modules using airborne imaging spectroscopy data based on their spectral features; (2) investigate the sampling robustness of urban material gradients; (3) analyze the area transferability of urban material gradients

Feasibility Study for an Aquatic Ecosystem Earth Observing System Version 1.2.

International audienceMany Earth observing sensors have been designed, built and launched with primary objectives of either terrestrial or ocean remote sensing applications. Often the data from these sensors are also used for freshwater, estuarine and coastal water quality observations, bathymetry and benthic mapping. However, such land and ocean specific sensors are not designed for these complex aquatic environments and consequently are not likely to perform as well as a dedicated sensor would. As a CEOS action, CSIRO and DLR have taken the lead on a feasibility assessment to determine the benefits and technological difficulties of designing an Earth observing satellite mission focused on the biogeochemistry of inland, estuarine, deltaic and near coastal waters as well as mapping macrophytes, macro-algae, sea grasses and coral reefs. These environments need higher spatial resolution than current and planned ocean colour sensors offer and need higher spectral resolution than current and planned land Earth observing sensors offer (with the exception of several R&D type imaging spectrometry satellite missions). The results indicate that a dedicated sensor of (non-oceanic) aquatic ecosystems could be a multispectral sensor with ~26 bands in the 380-780 nm wavelength range for retrieving the aquatic ecosystem variables as well as another 15 spectral bands between 360-380 nm and 780-1400 nm for removing atmospheric and air-water interface effects. These requirements are very close to defining an imaging spectrometer with spectral bands between 360 and 1000 nm (suitable for Si based detectors), possibly augmented by a SWIR imaging spectrometer. In that case the spectral bands would ideally have 5 nm spacing and Full Width Half Maximum (FWHM), although it may be necessary to go to 8 nm wide spectral bands (between 380 to 780nm where the fine spectral features occur -mainly due to photosynthetic or accessory pigments) to obtain enough signal to noise. The spatial resolution of such a global mapping mission would be between ~17 and ~33 m enabling imaging of the vast majority of water bodies (lakes, reservoirs, lagoons, estuaries etc.) larger than 0.2 ha and ~25% of river reaches globally (at ~17 m resolution) whilst maintaining sufficient radiometric resolution

PyrSat - Prevention and response to wild fires with an intelligent Earth observation CubeSat

Forest fires are a pervasive and serious problem. Besides loss of life and extensive environmental damage, fires also result in substantial economic losses, not to mention property damage, injuries, displacements and hardships experienced by the affected citizens. This project proposes a low-cost intelligent hyperspectral 3U CubeSat for the production of fire risk and burnt area maps. It applies Machine Learning algorithms to autonomously process images and obtain final data products on-board the satellite for direct transmission to users on the ground. Used in combination with other services such as EFFIS or AFIS, the system could considerably reduce the extent and consequences of forest fires

Satellite Ocean Colour: Current Status and Future Perspective

Spectrally resolved water-leaving radiances (ocean colour) and inferred chlorophyll concentration are key to studying phytoplankton dynamics at seasonal and interannual scales, for a better understanding of the role of phytoplankton in marine biogeochemistry; the global carbon cycle; and the response of marine ecosystems to climate variability, change and feedback processes. Ocean colour data also have a critical role in operational observation systems monitoring coastal eutrophication, harmful algal blooms, and sediment plumes. The contiguous ocean-colour record reached 21 years in 2018; however, it is comprised of a number of one-off missions such that creating a consistent time-series of ocean-colour data requires merging of the individual sensors (including MERIS, Aqua-MODIS, SeaWiFS, VIIRS, and OLCI) with differing sensor characteristics, without introducing artefacts. By contrast, the next decade will see consistent observations from operational ocean colour series with sensors of similar design and with a replacement strategy. Also, by 2029 the record will start to be of sufficient duration to discriminate climate change impacts from natural variability, at least in some regions. This paper describes the current status and future prospects in the field of ocean colour focusing on large to medium resolution observations of oceans and coastal seas. It reviews the user requirements in terms of products and uncertainty characteristics and then describes features of current and future satellite ocean-colour sensors, both operational and innovative. The key role of in situ validation and calibration is highlighted as are ground segments that process the data received from the ocean-colour sensors and deliver analysis-ready products to end-users. Example applications of the ocean-colour data are presented, focusing on the climate data record and operational applications including water quality and assimilation into numerical models. Current capacity building and training activities pertinent to ocean colour are described and finally a summary of future perspectives is provided

Investigation into the bio-physical constraints on farmer turn-out-date decisions using remote sensing and meteorological data.

ThesisDoctoral thesisAccepted versionGrass is the most common landcover in Ireland and covers a bigger percentage (52%) of the country than any other in Europe. Grass as fodder is Ireland’s most important crop and is the foundation of its most important indigenous industry, agriculture. Yet knowledge of its distribution, performance and yield is scant. How grass is nationally, on a farm by farm, year by year basis managed is not known. In this thesis the gaps in knowledge about grassland performance across Ireland are presented along with arguments on why these knowledge gaps should be closed. As an example the need for high spatial resolution animal stocking rate data in European temperate grassland systems is shown. The effect of high stocking density on grass management is most apparent early in the growing season, and a 250m scale characterization of early spring vegetation growth from 2003-2012, based on MODIS NDVI time series products, is constructed. The average rate of growth is determined as a simple linear model for each pixel, using only the highest quality data for the period. These decadal spring growth model coefficients, start of season cover and growth rate, are regressed against log of stocking rate (r2 19 = 0.75, p<0.001). This model stocking rate is used to create a map of grassland use intensity in Ireland, which, when tested against an independent set of stocking data, is shown to be successful with an RMSE of 0.13 Livestock Unit/ha for a range of stocking densities from 0.1 to 3.3 Livestock Unit/ha. This model provides the first validated high resolution approach to mapping stocking rates in intensively managed European grassland systems. There is a demonstrated a need for a system to estimate current growing conditions. Using the spring growth model constructed for estimating stocking density a new style of grass growth progress anomaly map in the time-domain was developed. Using the developed satellite dataset 1 and 12 years of ground climate station data in Ireland, NDVI was modelled against time as a proxy for grass growth This model is the reference for estimating current seasonal progress of grass growth against a ten year average. The model is developed to estimate Seasonal Progress Anomalies in the Time domain (SPAT), giving a result in terms of “days behind” and “days ahead” of the norm. SPAT estimates for 2012 and 2013 are compared to ground based estimates from 30 climate stations and have a correlation coefficient of 0.897 and RMSE of 15days. The method can successfully map current grass growth trends compared to the average and present this information to the farmer in simple everyday language. This is understood by the author to be the first validated growth anomaly service, and the first for intensive European grasslands. The decisions on when to turn out cattle (the turn out date (TOD)) from winter housing to spring grazing is an important one on Irish dairy farms which has significant impacts on operating costs on the farm. To examine the relationship of TOD to conditions, the National Farm Survey (NFS) of Ireland database was geocoded and the data on turn out dates from 199 farms across Ireland over five years was used. A fixed effects linear panel data model was employed to explore the association between TOD and conditions, as it allows for unobserved variation between farmers to be ignored in favour of modelling the variance year on year. The environmental variables used in the analysis account for 38% of the variance in the turn out dates on farms nationwide. National seasonal conditions dominate over local variation, and for every week earlier grass grows in spring, farmers gain 3.7 days in grazing season but ignore 3.3 days of growth that could have been used. Every 100mm extra rain in spring means TOD is a day later and every dry day leads to turn out being half a day earlier. A well-drained soil makes TOD 2.5 days earlier compared to a poorly drained soil and TOD gets a day later for every 16km north form the south coast. This work demonstrates that precision agriculture 1 driven by optical and radar satellite data is closer to being a reality in Europe driven by enormous amounts of free imagery from NASA and the ESA Sentinel programs coupled with open source meteorological data and models and new developments in data analytics

Remote Sensing of Plant Biodiversity

This Open Access volume aims to methodologically improve our understanding of biodiversity by linking disciplines that incorporate remote sensing, and uniting data and perspectives in the fields of biology, landscape ecology, and geography. The book provides a framework for how biodiversity can be detected and evaluated—focusing particularly on plants—using proximal and remotely sensed hyperspectral data and other tools such as LiDAR. The volume, whose chapters bring together a large cross-section of the biodiversity community engaged in these methods, attempts to establish a common language across disciplines for understanding and implementing remote sensing of biodiversity across scales. The first part of the book offers a potential basis for remote detection of biodiversity. An overview of the nature of biodiversity is described, along with ways for determining traits of plant biodiversity through spectral analyses across spatial scales and linking spectral data to the tree of life. The second part details what can be detected spectrally and remotely. Specific instrumentation and technologies are described, as well as the technical challenges of detection and data synthesis, collection and processing. The third part discusses spatial resolution and integration across scales and ends with a vision for developing a global biodiversity monitoring system. Topics include spectral and functional variation across habitats and biomes, biodiversity variables for global scale assessment, and the prospects and pitfalls in remote sensing of biodiversity at the global scale