Checkpointing as a Service in Heterogeneous Cloud Environments

A non-invasive, cloud-agnostic approach is demonstrated for extending existing cloud platforms to include checkpoint-restart capability. Most cloud platforms currently rely on each application to provide its own fault tolerance. A uniform mechanism within the cloud itself serves two purposes: (a) direct support for long-running jobs, which would otherwise require a custom fault-tolerant mechanism for each application; and (b) the administrative capability to manage an over-subscribed cloud by temporarily swapping out jobs when higher priority jobs arrive. An advantage of this uniform approach is that it also supports parallel and distributed computations, over both TCP and InfiniBand, thus allowing traditional HPC applications to take advantage of an existing cloud infrastructure. Additionally, an integrated health-monitoring mechanism detects when long-running jobs either fail or incur exceptionally low performance, perhaps due to resource starvation, and proactively suspends the job. The cloud-agnostic feature is demonstrated by applying the implementation to two very different cloud platforms: Snooze and OpenStack. The use of a cloud-agnostic architecture also enables, for the first time, migration of applications from one cloud platform to another.Comment: 20 pages, 11 figures, appears in CCGrid, 201

The Technology of Programming for a Cluster Computer by the Remote Terminal with OS Windows

The problem of preparation of a program to perform it on multiprocessor system of a cluster type is considered. When developing programs for a cluster computer the technology based on use of the remote terminal is applied. The situation when such remote terminal is the computer with operational system Windows is considered. The set of the tool means, allowing carrying out of editing program texts, compiling and starting programs on a cluster computer, is suggested. Advantage of an offered way of preparation of programs to execution is that it allows as much as possible to use practical experience of programmers used to working in OS Windows environment

A methodology for full-system power modeling in heterogeneous data centers

The need for energy-awareness in current data centers has encouraged the use of power modeling to estimate their power consumption. However, existing models present noticeable limitations, which make them application-dependent, platform-dependent, inaccurate, or computationally complex. In this paper, we propose a platform-and application-agnostic methodology for full-system power modeling in heterogeneous data centers that overcomes those limitations. It derives a single model per platform, which works with high accuracy for heterogeneous applications with different patterns of resource usage and energy consumption, by systematically selecting a minimum set of resource usage indicators and extracting complex relations among them that capture the impact on energy consumption of all the resources in the system. We demonstrate our methodology by generating power models for heterogeneous platforms with very different power consumption profiles. Our validation experiments with real Cloud applications show that such models provide high accuracy (around 5% of average estimation error).This work is supported by the Spanish Ministry of Economy and Competitiveness under contract TIN2015-65316-P, by the Gener- alitat de Catalunya under contract 2014-SGR-1051, and by the European Commission under FP7-SMARTCITIES-2013 contract 608679 (RenewIT) and FP7-ICT-2013-10 contracts 610874 (AS- CETiC) and 610456 (EuroServer).Peer ReviewedPostprint (author's final draft

Parallel Astronomical Data Processing with Python: Recipes for multicore machines

High performance computing has been used in various fields of astrophysical research. But most of it is implemented on massively parallel systems (supercomputers) or graphical processing unit clusters. With the advent of multicore processors in the last decade, many serial software codes have been re-implemented in parallel mode to utilize the full potential of these processors. In this paper, we propose parallel processing recipes for multicore machines for astronomical data processing. The target audience are astronomers who are using Python as their preferred scripting language and who may be using PyRAF/IRAF for data processing. Three problems of varied complexity were benchmarked on three different types of multicore processors to demonstrate the benefits, in terms of execution time, of parallelizing data processing tasks. The native multiprocessing module available in Python makes it a relatively trivial task to implement the parallel code. We have also compared the three multiprocessing approaches - Pool/Map, Process/Queue, and Parallel Python. Our test codes are freely available and can be downloaded from our website.Comment: 15 pages, 7 figures, 1 table, "for associated test code, see http://astro.nuigalway.ie/staff/navtejs", Accepted for publication in Astronomy and Computin

The Paragraph: Design and Implementation of the STAPL Parallel Task Graph

Parallel programming is becoming mainstream due to the increased availability of multiprocessor and multicore architectures and the need to solve larger and more complex problems. Languages and tools available for the development of parallel applications are often difficult to learn and use. The Standard Template Adaptive Parallel Library (STAPL) is being developed to help programmers address these difficulties. STAPL is a parallel C++ library with functionality similar to STL, the ISO adopted C++ Standard Template Library. STAPL provides a collection of parallel pContainers for data storage and pViews that provide uniform data access operations by abstracting away the details of the pContainer data distribution. Generic pAlgorithms are written in terms of PARAGRAPHs, high level task graphs expressed as a composition of common parallel patterns. These task graphs define a set of operations on pViews as well as any ordering (i.e., dependences) on these operations that must be enforced by STAPL for a valid execution. The subject of this dissertation is the PARAGRAPH Executor, a framework that manages the runtime instantiation and execution of STAPL PARAGRAPHS. We address several challenges present when using a task graph program representation and discuss a novel approach to dependence specification which allows task graph creation and execution to proceed concurrently. This overlapping increases scalability and reduces the resources required by the PARAGRAPH Executor. We also describe the interface for task specification as well as optimizations that address issues such as data locality. We evaluate the performance of the PARAGRAPH Executor on several parallel machines including massively parallel Cray XT4 and Cray XE6 systems and an IBM Power5 cluster. Using tests including generic parallel algorithms, kernels from the NAS NPB suite, and a nuclear particle transport application written in STAPL, we demonstrate that the PARAGRAPH Executor enables STAPL to exhibit good scalability on more than $10^4$ processors

Overlapping of Communication and Computation and Early Binding: Fundamental Mechanisms for Improving Parallel Performance on Clusters of Workstations

This study considers software techniques for improving performance on clusters of workstations and approaches for designing message-passing middleware that facilitate scalable, parallel processing. Early binding and overlapping of communication and computation are identified as fundamental approaches for improving parallel performance and scalability on clusters. Currently, cluster computers using the Message-Passing Interface for interprocess communication are the predominant choice for building high-performance computing facilities, which makes the findings of this work relevant to a wide audience from the areas of high-performance computing and parallel processing. The performance-enhancing techniques studied in this work are presently underutilized in practice because of the lack of adequate support by existing message-passing libraries and are also rarely considered by parallel algorithm designers. Furthermore, commonly accepted methods for performance analysis and evaluation of parallel systems omit these techniques and focus primarily on more obvious communication characteristics such as latency and bandwidth. This study provides a theoretical framework for describing early binding and overlapping of communication and computation in models for parallel programming. This framework defines four new performance metrics that facilitate new approaches for performance analysis of parallel systems and algorithms. This dissertation provides experimental data that validate the correctness and accuracy of the performance analysis based on the new framework. The theoretical results of this performance analysis can be used by designers of parallel system and application software for assessing the quality of their implementations and for predicting the effective performance benefits of early binding and overlapping. This work presents MPI/Pro, a new MPI implementation that is specifically optimized for clusters of workstations interconnected with high-speed networks. This MPI implementation emphasizes features such as persistent communication, asynchronous processing, low processor overhead, and independent message progress. These features are identified as critical for delivering maximum performance to applications. The experimental section of this dissertation demonstrates the capability of MPI/Pro to facilitate software techniques that result in significant application performance improvements. Specific demonstrations with Virtual Interface Architecture and TCP/IP over Ethernet are offered