DBRS: Directed Acyclic Graph based Reliable Scheduling Approach in Large Scale Computing

In large scale environments, scheduling presents a significant challenge because it is an NP-hard problem. There are basically two types of task in execution- dependent task and independent task. The execution of dependent task must follow a strict order because output of one activity is typically the input of another. In this paper, a reliable fault tolerant approach is proposed for scheduling of dependent task in large scale computing environments. The workflow of dependent task is represented with the help of a DAG (directed acyclic graph). The proposed methodology is evaluated over various parameters by applying it in a large scale computing environment- ‘grid computing’. Grid computing is a high performance computing for solving complex, large and data intensive problems in various fields. The result analysis shows that the proposed DAG based reliable scheduling (DBRS) approach increases the performance of system by decreasing the makespan, number of failures and increasing performance improvement ratio (PIR)

High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment

Bioinformatics applications are naturally distributed, due to distribution of involved data sets, experimental data and biological databases. They require high computing power, owing to the large size of data sets and the complexity of basic computations, may access heterogeneous data, where heterogeneity is in data format, access policy, distribution, etc., and require a secure infrastructure, because they could access private data owned by different organizations. The Problem Solving Environment (PSE) is an approach and a technology that can fulfil such bioinformatics requirements. The PSE can be used for the definition and composition of complex applications, hiding programming and configuration details to the user that can concentrate only on the specific problem. Moreover, Grids can be used for building geographically distributed collaborative problem solving environments and Grid aware PSEs can search and use dispersed high performance computing, networking, and data resources. In this work, the PSE solution has been chosen as the integration platform of bioinformatics tools and data sources. In particular an experiment of multiple sequence alignment on large scale, supported by the LIBIPSE, is presented

Parallel evolutionary algorithms for scheduling on heterogeneous computing and grid environments

This thesis studies the application of sequential and parallel evolutionary algorithms to the scheduling problem in heterogeneous computing and grid environments, a key problem when executing tasks in distributed computing systems. Since the 1990's, this class of systems has been increasingly employed to provide support for solving complex problems using high-performance computing techniques. The scheduling problem in heterogeneous computing systems is an NP-hard optimization problem, which has been tackled using several optimization methods in the past. Among many new techniques for optimization, evolutionary computing methods have been successfully applied to this class of problems. In this work, several evolutionary algorithms in their sequential and parallel variants are specically designed to provide accurate solutions for the problem, allowing to compute an eficient planning for heterogeneous computing and grid environments. New problem instances, far more complex than those existing in the related literature, are introduced in this thesis in order to study the scalability of the presented parallel evolutionary algorithms. In addition, a new parallel micro-CHC algorithm is developed, inspired by useful ideas from the multiobjective optimization field. Eficient numerical results of this algorithm are reported in the experimental analysis performed on both well-known problem instances and the large instances specially designed in this work. The comparative study including traditional methods and evolutionary algorithms shows that the new parallel micro-CHC is able to achieve a high problem solving eficacy, outperforming previous results already reported for the problem and also having a good scalability behavior when solving high dimension problem instances.In addition, two variants of the scheduling problem in heterogeneous environments are also tackled, showing the versatility of the proposed approach using parallel evolutionary algorithms to deal with both dynamic and multi-objective scenarios.Esta tesis estudia la aplicación de algoritmos evolutivos secuenciales y paralelos para el problema de planicación de tareas en entornos de cómputo heterogéneos y de computación grid. Desde la década de 1990, estos sistemas computacionales han sido utilizados con éxito para resolver problemas complejos utilizando técnicas de computación de alto desempeo. El problema de planificación de tareas en entornos heterogéneos es un problema de optimización NP-difícil que ha sido abordado utilizando diversas técnicas. Entre las técnicas emergentes para optimización combinatoria, los algoritmos evolutivos han sido aplicados con éxito a esta clase de problemas. En este trabajo, varios algoritmos evolutivos en sus versiones secuenciales y paralelas han sido especificamente diseados para alcanzar soluciones precisas para el problema de planicación de tareas en entornos de heterogéneos, permitiendo calcular planificaciones eficientes para entornos que modelan clusters de computadores y plataformas de computación grid. Nuevas instancias del problema, con una complejidad mucho mayor que las previamente existentes en la literatura relacionada, son presentadas en esta tesis con el objetivo de analizar la escalabilidad de los algoritmos evolutivos propuestos. Complementariamente, un nuevo método, el micro-CHC paralelo es desarrollado, inspirado en ideas ítiles provenientes del área de optimización multiobjetivo. Resultados numéricos precisos y eficientes se reportan en el análisis experimental realizado sobre instancias estándar del problema y sobre las nuevas instancias especificamente diseñadas en este trabajo.El estudio comparativo que incluye a métodos tradicionales para planificación de tareas, los nuevos métodos propuestos y algoritmos evolutivos previamente aplicados al problema, demuestra que el nuevo micro-CHC paralelo es capaz de alcanzar altos valores de eficacia, superando a los mejores resultados previamente reportados en la literatura del área y mostrando un buen comportamiento de escalabilidad para resolver las instancias de gran dimensión. Además, dos variantes del problema de planificación de tareas en entornos heterogéneos han sido inicialmente estudiadas, comprobándose la versatilidad del enfoque propuesto para resolver las variantes dinámica y multiobjetivo del problema

Leveraging legacy codes to distributed problem solving environments: A web service approach

This paper describes techniques used to leverage high performance legacy codes as CORBA components to a distributed problem solving environment. It first briefly introduces the software architecture adopted by the environment. Then it presents a CORBA oriented wrapper generator (COWG) which can be used to automatically wrap high performance legacy codes as CORBA components. Two legacy codes have been wrapped with COWG. One is an MPI-based molecular dynamic simulation (MDS) code, the other is a finite element based computational fluid dynamics (CFD) code for simulating incompressible Navier-Stokes flows. Performance comparisons between runs of the MDS CORBA component and the original MDS legacy code on a cluster of workstations and on a parallel computer are also presented. Wrapped as CORBA components, these legacy codes can be reused in a distributed computing environment. The first case shows that high performance can be maintained with the wrapped MDS component. The second case shows that a Web user can submit a task to the wrapped CFD component through a Web page without knowing the exact implementation of the component. In this way, a user’s desktop computing environment can be extended to a high performance computing environment using a cluster of workstations or a parallel computer

A grid-enabled problem solving environment for parallel computational engineering design

This paper describes the development and application of a piece of engineering software that provides a problem solving environment (PSE) capable of launching, and interfacing with, computational jobs executing on remote resources on a computational grid. In particular it is demonstrated how a complex, serial, engineering optimisation code may be efficiently parallelised, grid-enabled and embedded within a PSE. The environment is highly flexible, allowing remote users from different sites to collaborate, and permitting computational tasks to be executed in parallel across multiple grid resources, each of which may be a parallel architecture. A full working prototype has been built and successfully applied to a computationally demanding engineering optimisation problem. This particular problem stems from elastohydrodynamic lubrication and involves optimising the computational model for a lubricant based on the match between simulation results and experimentally observed data

Panel on future challenges in modeling methodology

This panel paper presents the views of six researchers and practitioners of simulation modeling. Collectively we attempt to address a range of key future challenges to modeling methodology. It is hoped that the views of this paper, and the presentations made by the panelists at the 2004 Winter Simulation Conference will raise awareness and stimulate further discussion on the future of modeling methodology in areas such as modeling problems in business applications, human factors and geographically dispersed networks; rapid model development and maintenance; legacy modeling approaches; markup languages; virtual interactive process design and simulation; standards; and Grid computing