CUSBoost: Cluster-based Under-sampling with Boosting for Imbalanced Classification

Class imbalance classification is a challenging research problem in data mining and machine learning, as most of the real-life datasets are often imbalanced in nature. Existing learning algorithms maximise the classification accuracy by correctly classifying the majority class, but misclassify the minority class. However, the minority class instances are representing the concept with greater interest than the majority class instances in real-life applications. Recently, several techniques based on sampling methods (under-sampling of the majority class and over-sampling the minority class), cost-sensitive learning methods, and ensemble learning have been used in the literature for classifying imbalanced datasets. In this paper, we introduce a new clustering-based under-sampling approach with boosting (AdaBoost) algorithm, called CUSBoost, for effective imbalanced classification. The proposed algorithm provides an alternative to RUSBoost (random under-sampling with AdaBoost) and SMOTEBoost (synthetic minority over-sampling with AdaBoost) algorithms. We evaluated the performance of CUSBoost algorithm with the state-of-the-art methods based on ensemble learning like AdaBoost, RUSBoost, SMOTEBoost on 13 imbalance binary and multi-class datasets with various imbalance ratios. The experimental results show that the CUSBoost is a promising and effective approach for dealing with highly imbalanced datasets.Comment: CSITSS-201

Empowering One-vs-One Decomposition with Ensemble Learning for Multi-Class Imbalanced Data

Zhongliang Zhang was supported by the National Science Foundation of China (NSFC Proj. 61273204) and CSC Scholarship Program (CSC NO. 201406080059). Bartosz Krawczyk was supported by the Polish National Science Center under the grant no. UMO-2015/19/B/ST6/01597. Salvador Garcia and Francisco Herrera were partially supported by the Spanish Ministry of Education and Science under Project TIN2014-57251-P and the Andalusian Research Plan P10-TIC-6858, P11-TIC-7765. Alejandro Rosales-Perez was supported by the CONACyT grant 329013.Multi-class imbalance classification problems occur in many real-world applications, which suffer from the quite different distribution of classes. Decomposition strategies are well-known techniques to address the classification problems involving multiple classes. Among them binary approaches using one-vs-one and one-vs-all has gained a significant attention from the research community. They allow to divide multi-class problems into several easier-to-solve two-class sub-problems. In this study we develop an exhaustive empirical analysis to explore the possibility of empowering the one-vs-one scheme for multi-class imbalance classification problems with applying binary ensemble learning approaches. We examine several state-of-the-art ensemble learning methods proposed for addressing the imbalance problems to solve the pairwise tasks derived from the multi-class data set. Then the aggregation strategy is employed to combine the binary ensemble outputs to reconstruct the original multi-class task. We present a detailed experimental study of the proposed approach, supported by the statistical analysis. The results indicate the high effectiveness of ensemble learning with one-vs-one scheme in dealing with the multi-class imbalance classification problems.National Natural Science Foundation of China (NSFC) 61273204CSC Scholarship Program (CSC) 201406080059Polish National Science Center UMO-2015/19/B/ST6/01597Spanish Government TIN2014-57251-PAndalusian Research Plan P10-TIC-6858 P11-TIC-7765Consejo Nacional de Ciencia y Tecnologia (CONACyT) 32901

Coupling different methods for overcoming the class imbalance problem

Many classification problems must deal with imbalanced datasets where one class \u2013 the majority class \u2013 outnumbers the other classes. Standard classification methods do not provide accurate predictions in this setting since classification is generally biased towards the majority class. The minority classes are oftentimes the ones of interest (e.g., when they are associated with pathological conditions in patients), so methods for handling imbalanced datasets are critical. Using several different datasets, this paper evaluates the performance of state-of-the-art classification methods for handling the imbalance problem in both binary and multi-class datasets. Different strategies are considered, including the one-class and dimension reduction approaches, as well as their fusions. Moreover, some ensembles of classifiers are tested, in addition to stand-alone classifiers, to assess the effectiveness of ensembles in the presence of imbalance. Finally, a novel ensemble of ensembles is designed specifically to tackle the problem of class imbalance: the proposed ensemble does not need to be tuned separately for each dataset and outperforms all the other tested approaches. To validate our classifiers we resort to the KEEL-dataset repository, whose data partitions (training/test) are publicly available and have already been used in the open literature: as a consequence, it is possible to report a fair comparison among different approaches in the literature. Our best approach (MATLAB code and datasets not easily accessible elsewhere) will be available at https://www.dei.unipd.it/node/2357

Class imbalance ensemble learning based on the margin theory

The proportion of instances belonging to each class in a data-set plays an important role in machine learning. However, the real world data often suffer from class imbalance. Dealing with multi-class tasks with different misclassification costs of classes is harder than dealing with two-class ones. Undersampling and oversampling are two of the most popular data preprocessing techniques dealing with imbalanced data-sets. Ensemble classifiers have been shown to be more effective than data sampling techniques to enhance the classification performance of imbalanced data. Moreover, the combination of ensemble learning with sampling methods to tackle the class imbalance problem has led to several proposals in the literature, with positive results. The ensemble margin is a fundamental concept in ensemble learning. Several studies have shown that the generalization performance of an ensemble classifier is related to the distribution of its margins on the training examples. In this paper, we propose a novel ensemble margin based algorithm, which handles imbalanced classification by employing more low margin examples which are more informative than high margin samples. This algorithm combines ensemble learning with undersampling, but instead of balancing classes randomly such as UnderBagging, our method pays attention to constructing higher quality balanced sets for each base classifier. In order to demonstrate the effectiveness of the proposed method in handling class imbalanced data, UnderBagging and SMOTEBagging are used in a comparative analysis. In addition, we also compare the performances of different ensemble margin definitions, including both supervised and unsupervised margins, in class imbalance learning

Machine Learning and Integrative Analysis of Biomedical Big Data.

Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues

An ensemble approach of dual base learners for multi-class classification problems

In this work, we formalise and evaluate an ensemble of classifiers that is designed for the resolution of multi-class problems. To achieve a good accuracy rate, the base learners are built with pairwise coupled binary and multi-class classifiers. Moreover, to reduce the computational cost of the ensemble and to improve its performance, these classifiers are trained using a specific attribute subset. This proposal offers the opportunity to capture the advantages provided by binary decomposition methods, by attribute partitioning methods, and by cooperative characteristics associated with a combination of redundant base learners. To analyse the quality of this architecture, its performance has been tested on different domains, and the results have been compared to other well-known classification methods. This experimental evaluation indicates that our model is, in most cases, as accurate as these methods, but it is much more efficient. (C) 2014 Elsevier B.V. All rights reserved.This research was supported by the Spanish MICINN under Projects TRA2010-20225-C03-01, TRA 2011-29454-C03-02, and TRA 2011-29454-C03-03