Classification of Human Ventricular Arrhythmia in High Dimensional Representation Spaces

We studied classification of human ECGs labelled as normal sinus rhythm, ventricular fibrillation and ventricular tachycardia by means of support vector machines in different representation spaces, using different observation lengths. ECG waveform segments of duration 0.5-4 s, their Fourier magnitude spectra, and lower dimensional projections of Fourier magnitude spectra were used for classification. All considered representations were of much higher dimension than in published studies. Classification accuracy improved with segment duration up to 2 s, with 4 s providing little improvement. We found that it is possible to discriminate between ventricular tachycardia and ventricular fibrillation by the present approach with much shorter runs of ECG (2 s, minimum 86% sensitivity per class) than previously imagined. Ensembles of classifiers acting on 1 s segments taken over 5 s observation windows gave best results, with sensitivities of detection for all classes exceeding 93%.Comment: 9 pages, 2 tables, 5 figure

Deep Learning in Cardiology

The medical field is creating large amount of data that physicians are unable to decipher and use efficiently. Moreover, rule-based expert systems are inefficient in solving complicated medical tasks or for creating insights using big data. Deep learning has emerged as a more accurate and effective technology in a wide range of medical problems such as diagnosis, prediction and intervention. Deep learning is a representation learning method that consists of layers that transform the data non-linearly, thus, revealing hierarchical relationships and structures. In this review we survey deep learning application papers that use structured data, signal and imaging modalities from cardiology. We discuss the advantages and limitations of applying deep learning in cardiology that also apply in medicine in general, while proposing certain directions as the most viable for clinical use.Comment: 27 pages, 2 figures, 10 table

A study of early afterdepolarizations in a model for human ventricular tissue

Sudden cardiac death is often caused by cardiac arrhythmias. Recently, special attention has been given to a certain arrhythmogenic condition, the long-QT syndrome, which occurs as a result of genetic mutations or drug toxicity. The underlying mechanisms of arrhythmias, caused by the long-QT syndrome, are not fully understood. However, arrhythmias are often connected to special excitations of cardiac cells, called early afterdepolarizations (EADs), which are depolarizations during the repolarizing phase of the action potential. So far, EADs have been studied mainly in isolated cardiac cells. However, the question on how EADs at the single-cell level can result in fibrillation at the tissue level, especially in human cell models, has not been widely studied yet. In this paper, we study wave patterns that result from single-cell EAD dynamics in a mathematical model for human ventricular cardiac tissue. We induce EADs by modeling experimental conditions which have been shown to evoke EADs at a single-cell level: by an increase of L-type Ca currents and a decrease of the delayed rectifier potassium currents. We show that, at the tissue level and depending on these parameters, three types of abnormal wave patterns emerge. We classify them into two types of spiral fibrillation and one type of oscillatory dynamics. Moreover, we find that the emergent wave patterns can be driven by calcium or sodium currents and we find phase waves in the oscillatory excitation regime. From our simulations we predict that arrhythmias caused by EADs can occur during normal wave propagation and do not require tissue heterogeneities. Experimental verification of our results is possible for experiments at the cell-culture level, where EADs can be induced by an increase of the L-type calcium conductance and by the application of I blockers, and the properties of the emergent patterns can be studied by optical mapping of the voltage and calcium

Early Detection and Continuous Monitoring of Atrial Fibrillation from ECG Signals with a Novel Beat-Wise Severity Ranking Approach

Irregularities in heartbeats and cardiac functioning outside of clinical settings are often not available to the clinicians, and thus ignored. But monitoring these with high-risk population might assist in early detection and continuous monitoring of Atrial Fibrillation(AF). Wearable devices like smart watches and wristbands, which can collect Electrocardigraph(ECG) signals, can monitor and warn users of unusual signs in a timely manner. Thus, there is a need to develop a real-time monitoring system for AF from ECG. We propose an algorithm for a simple beat-by-beat ECG signal multilevel classifier for AF detection and a quantitative severity scale (between 0 to 1) for user feedback. For this study, we used ECG recordings from MIT BIH Atrial Fibrillation, MIT BIH Long-term Atrial Fibrillation Database. All ECG signals are preprocessed for reducing noise using filter. Preprocessed signal is analyzed for extracting 39 features including 20 of amplitude type and 19 of interval type. The feature space for all ECG recordings is considered for Classification. Training and testing data include all classes of data i.e., beats to identify various episodes for severity. Feature space from the test data is fed to the classifier which determines the class label based on trained model. A class label is determined based on number of occurences of AF and other arrhythmia episodes such as AB(Atrial Bigeminy), SBR(Sinus Bradycardia), SVTA(Supra Ventricular Tacchyarrhythmia). Accuracy of 96.7764% is attained with Random Forest algorithm, Furthermore, precision and recall are determined based on correct and incorrect classifications for each class. Precision and recall on average of Random Forest Classifier are obtained as 0.968 and 0.968 respectievely. This work provides a novel approach to enhance existing method of AF detection by identifying heartbeat class and calculates a quantitative severity metric that might help in early detection and continuous monitoring of AF

Perspective: a dynamics-based classification of ventricular arrhythmias

Despite key advances in the clinical management of life-threatening ventricular arrhythmias, culminating with the development of implantable cardioverter-defibrillators and catheter ablation techniques, pharmacologic/biologic therapeutics have lagged behind. The fundamental issue is that biological targets are molecular factors. Diseases, however, represent emergent properties at the scale of the organism that result from dynamic interactions between multiple constantly changing molecular factors. For a pharmacologic/biologic therapy to be effective, it must target the dynamic processes that underlie the disease. Here we propose a classification of ventricular arrhythmias that is based on our current understanding of the dynamics occurring at the subcellular, cellular, tissue and organism scales, which cause arrhythmias by simultaneously generating arrhythmia triggers and exacerbating tissue vulnerability. The goal is to create a framework that systematically links these key dynamic factors together with fixed factors (structural and electrophysiological heterogeneity) synergistically promoting electrical dispersion and increased arrhythmia risk to molecular factors that can serve as biological targets. We classify ventricular arrhythmias into three primary dynamic categories related generally to unstable Ca cycling, reduced repolarization, and excess repolarization, respectively. The clinical syndromes, arrhythmia mechanisms, dynamic factors and what is known about their molecular counterparts are discussed. Based on this framework, we propose a computational-experimental strategy for exploring the links between molecular factors, fixed factors and dynamic factors that underlie life-threatening ventricular arrhythmias. The ultimate objective is to facilitate drug development by creating an in silico platform to evaluate and predict comprehensively how molecular interventions affect not only a single targeted arrhythmia, but all primary arrhythmia dynamics categories as well as normal cardiac excitation-contraction coupling

Virtual cardiac monolayers for electrical wave propagation

The complex structure of cardiac tissue is considered to be one of the main determinants of an arrhythmogenic substrate. This study is aimed at developing the first mathematical model to describe the formation of cardiac tissue, using a joint in silico-in vitro approach. First, we performed experiments under various conditions to carefully characterise the morphology of cardiac tissue in a culture of neonatal rat ventricular cells. We considered two cell types, namely, cardiomyocytes and fibroblasts. Next, we proposed a mathematical model, based on the Glazier-Graner-Hogeweg model, which is widely used in tissue growth studies. The resultant tissue morphology was coupled to the detailed electrophysiological Korhonen-Majumder model for neonatal rat ventricular cardiomyocytes, in order to study wave propagation. The simulated waves had the same anisotropy ratio and wavefront complexity as those in the experiment. Thus, we conclude that our approach allows us to reproduce the morphological and physiological properties of cardiac tissue

Nonlinear physics of electrical wave propagation in the heart: a review

The beating of the heart is a synchronized contraction of muscle cells (myocytes) that are triggered by a periodic sequence of electrical waves (action potentials) originating in the sino-atrial node and propagating over the atria and the ventricles. Cardiac arrhythmias like atrial and ventricular fibrillation (AF,VF) or ventricular tachycardia (VT) are caused by disruptions and instabilities of these electrical excitations, that lead to the emergence of rotating waves (VT) and turbulent wave patterns (AF,VF). Numerous simulation and experimental studies during the last 20 years have addressed these topics. In this review we focus on the nonlinear dynamics of wave propagation in the heart with an emphasis on the theory of pulses, spirals and scroll waves and their instabilities in excitable media and their application to cardiac modeling. After an introduction into electrophysiological models for action potential propagation, the modeling and analysis of spatiotemporal alternans, spiral and scroll meandering, spiral breakup and scroll wave instabilities like negative line tension and sproing are reviewed in depth and discussed with emphasis on their impact in cardiac arrhythmias.Peer ReviewedPreprin

Feature Selection and Non-Euclidean Dimensionality Reduction: Application to Electrocardiology.

Heart disease has been the leading cause of human death for decades. To improve treatment of heart disease, algorithms to perform reliable computer diagnosis using electrocardiogram (ECG) data have become an area of active research. This thesis utilizes well-established methods from cluster analysis, classification, and localization to cluster and classify ECG data, and aims to help clinicians diagnose and treat heart diseases. The power of these methods is enhanced by state-of-the-art feature selection and dimensionality reduction. The specific contributions of this thesis are as follows. First, a unique combination of ECG feature selection and mixture model clustering is introduced to classify the sites of origin of ventricular tachycardias. Second, we apply a restricted Boltzmann machine (RBM) to learn sparse representations of ECG signals and to build an enriched classifier from patient data. Third, a novel manifold learning algorithm is introduced, called Quaternion Laplacian Information Maps (QLIM), and is applied to visualize high-dimensional ECG signals. These methods are applied to design of an automated supervised classification algorithm to help a physician identify the origin of ventricular arrhythmias (VA) directed from a patient's ECG data. The algorithm is trained on a large database of ECGs and catheter positions collected during the electrophysiology (EP) pace-mapping procedures. The proposed algorithm is demonstrated to have a correct classification rate of over 80% for the difficult task of classifying VAs having epicardial or endocardial origins.PhDElectrical Engineering: SystemsUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttp://deepblue.lib.umich.edu/bitstream/2027.42/113303/1/dyjung_1.pd