Bottom Up Quotients and Residuals for Tree Languages

In this paper, we extend the notion of tree language quotients to bottom-up quotients. Instead of computing the residual of a tree language from top to bottom and producing a list of tree languages, we show how to compute a set of k-ary trees, where k is an arbitrary integer. We define the quotient formula for different combinations of tree languages: union, symbol products, compositions, iterated symbol products and iterated composition. These computations lead to the definition of the bottom-up quotient tree automaton, that turns out to be the minimal deterministic tree automaton associated with a regular tree language in the case of the 0-ary trees

CALF: Categorical Automata Learning Framework

Automata learning is a popular technique used to automatically construct an automaton model from queries, and much research has gone into devising specific adaptations of such algorithms for different types of automata. This thesis presents a unifying approach to many existing algorithms using category theory, which eases correctness proofs and guides the design of new automata learning algorithms. We provide a categorical automata learning framework---CALF---that at its core includes an abstract version of the popular L* algorithm. Using this abstract algorithm we derive several concrete ones. We instantiate the framework to a large class of Set functors, by which we recover for the first time a tree automata learning algorithm from an abstract framework, which moreover is the first to cover also algebras of quotiented polynomial functors. We further develop a general algorithm to learn weighted automata over a semiring. On the one hand, we identify a class of semirings, principal ideal domains, for which this algorithm terminates and for which no learning algorithm previously existed; on the other hand, we show that it does not terminate over the natural numbers. Finally, we develop an algorithm to learn automata with side-effects determined by a monad and provide several optimisations, as well as an implementation with experimental evaluation. This allows us to improve existing algorithms and opens the door to learning a wide range of automata

Rebuilding fish-human relationships by quantifying combined toxicity and evaluating policy related to legacy contamination

The central theme of this dissertation is relationships – building relationships as research partnerships, disrupting relationships through chemical contamination, and upholding existing relationships (i.e., responsibilities) to address industrial legacies. In partnership with the Keweenaw Bay Indian Community Lake Superior Band of Chippewa Indians (KBIC), this dissertation focuses on rebuilding fish-human relationships within the context of chemical contamination. By quantifying combined toxicity and evaluating the efficacy of cleaning up contamination, conclusions from this work help empower people to maintain practices and knowledges related to fish. In chapter 1, I positioned myself, a white, American settler scholar, within the context of Indigenous research grounded in Anishinaabe philosophies. My research is predicated on knowledge being a collection of practices that builds and maintains relationships with people and the environment. Being an indigenist researcher means being accountable to those relationships. In chapter 2, I co-created a research guidance document with KBIC to provide holistic guidance and specify support that enriches their efforts to protect and restore land and life. Our guidance uses the Medicine Wheel to illustrate an interconnected system of partnership teachings that include systems of mutual expectations and responsibilities. The guidance aims for balance between and among four seasons of research: relationship building, planning and prioritization, knowledge exchange, and synthesis and application. In chapter 3, I used a national database of fish tissue contaminant concentrations to evaluate frameworks for quantifying toxicity, spatial distributions of the components of toxicity, and variations in relative importance of chemicals in different fish types. Based on the results, I argue for using the most sensitive endpoint for components of a chemical mixture rather than the current framework that expects a shared toxic pathway. Research results show that the former is more protective and therefore represents a more appropriate strategy for protecting human health and the environment. In chapter 4, I compared PCB trends in the Great Lakes basin to evaluate the efficacy of Canada’s 2008 PCB reduction policy. My results show that local reductions of PCB stocks significantly reduced atmospheric PCB concentrations, but a comparable response was not seen in fish tissue. I suggest that fish tissue, as the primary exposure pathway, should be the medium monitored to evaluate policy efficacy

Some Contributions to the Algebraic Theory of Automata

En el present treball estudiarem els autòmats des d'una perspectiva tant algebraica com coalgebraica. Volem aprofitar la natura dual d'aquests objectes per a presentar un marc unificador que explique i estenga alguns resultats recents de la teoria d'autòmats. Per tant, la secció 2 conté nocions i definicions preliminars per a mantenir el treball tan contingut com siga possible. Així, presentarem les nocions d'àlgebra i coàlgebra per a un endofunctor. També introduirem alguns conceptes sobre monoides i llenguatges. En aquest capítol també exposarem les nocions d'autòmats deterministes i no deterministes, homomorfismes i bisimulacions d'autòmats i productes i coproductes d'aquestes estructures. Finalment, recordarem algunes nocions bàsiques de teoria de reticles. Des d'una perspectiva algebraica, els autòmats són àlgebres amb operacions unàries. En aquest context, una equació és simplement un parell de paraules. Direm que una equació és satisfeta per un autòmat si per a cada estat inicial possible els estats als quals s'arriba des de l'estat considerat sota l'acció de les dues paraules coincideix. Es pot provar que, per a un autòmat donat, podem construir el major conjunt d'equacions que aquest satisfà. Aquest conjunt d'equacions resulta ser una congruència en el monoide lliure associat a l'alfabet d'entrada i ens permet definir l'autòmat lliure, denotat per free. Pel que respecta a la perspectiva coalgebraica, un autòmat és un sistema de transicions amb estats finals. Així, una coequació és un conjunt de llenguatges. Direm que una coequació és satisfeta per un autòmat, si per a cada observació possible (coloracions sobre els estats indicant-ne la finalitat o no), el llenguatge acceptat per l'autòmat es troba dins la coequació considerada. Intuïtivament, les coequacions poden ser pensades com comportaments o especificacions en el disseny que se suposa que una coàlgebra deu tindre. Com hem fet abans, per a un autòmat donat, podem construir el menor conjunt de coequacions que aquest satisfà. Aquest conjunt de coequacions resulta ser un subconjunt amb característiques ben determinades del conjunt de tots els llenguatges associats a l'alfabet d'entrada i ens permet definir l'autòmat colliure, denotat per cofree. Provem, a més, que aquestes construccions basades en equacions i coequacions són functorials. Al capítol 3 hem establert un nou resultat que presenta la dualitat entre quocients de congruència del monoide lliure i el seu conjunt de coequacions, que són àlgebres booleanes completes i atòmiques tancades sota derivació i que hem anomenat preformacions de llenguatges. Aquesta dualitat no imposa cap restricció en la grandària dels objectes, per tant, també s'aplica a objectes infinits. El capítol 3 està basat en els següents articles: - J.J.M.M. Rutten, A. Ballester-Bolinches, and E. Cosme-Llópez. Varieties and covarieties of languages (preliminary version). In D. Kozen and M. Mislove, editors, Proceedings of MFPS XXIX, volume 298 of Electron. Notes Theor. Comput. Sci., pages 7–28, 2013. - A. Ballester-Bolinches, E. Cosme-Llópez, and J. Rutten. The dual equivalence of equations and coequations for automata. Information and Computation, 244:49 – 75, 2015. Aquesta dualitat és emprada en el capítol 4 per a presentar un nou apropament al teorema de varietats d'Eilenberg. En primer lloc presentem una descripció equivalent, basada en equacions i coequacions, de la noció original de varietat de llenguatges d'Eilenberg. Aquesta nova descripció és un dels millors exemples possibles del poder expressiu del functors free i cofree. Una adaptació adient d'aquestes construccions permet presentar un resultat de tipus Eilenberg per a formacions de monoides no necessàriament finits. En el nostre cas, primerament provem que les formacions de monoides estan en correspondència biunívoca amb les formacions de congruències. Un segon pas en la prova relaciona formacions de congruències amb formacions de llenguatges. Així, provem que tots tres conceptes són equivalents Formacions de monoides -- Formacions de congruències -- Formacions de llenguatges La primera correspondència pareix ser completament nova i relaciona formacions de monoides amb filtres de congruències per a cada monoide. L'última correspondència és un dels millors exemples on poder aplicar la dualitat presentada al capítol 3. A més, donem una aplicació d'aquestes equivalències per al cas dels llenguatges relativament disjuntius. Aquests teoremes poden ser adequadament modificats per a cobrir el cas de les varietats de monoides en el sentit de Birkhoff. Discutim aquest cas particular al final del capítol 4. Els resultats d'aquest capítol han estat enviats per a la seua possible publicació en una revista científica sota el títol - A. Ballester-Bolinches, E. Cosme-Llópez, R. Esteban-Romero, and J. Rutten. Formations of monoids, congruences, and formal languages. 2015. El capítol 5 està completament dedicat a l'estudi de l'objecte final associat als autòmats no deterministes. En general, les tècniques emprades en el capítol 5 difereixen de les presentades en els capítols 3 i 4. En conseqüència, al principi d'aquest capítol introduïm alguns conceptes preliminars sobre bisimulacions i objectes finals. E l nostre resultat principal és presentat en el Teorema 5.17, que descriu l'autòmat final no determinista amb l'ajuda d'estructures basades en llenguatges. A continuació, relacionem altres descripcions de l'autòmat final no determinista amb la nostra construcció. El capítol 5 està basat en el següent article: - A. Ballester-Bolinches, E. Cosme-Llópez, and R. Esteban-Romero. A description based on languages of the final non-deterministic automaton. Theor. Comput. Sci., 536(0):1 – 20, 2014. Certament, els diferents punts de vista emprats en aquesta dissertació ja han estat explorats en alguns altres treballs. Per això, al final de cada capítol presentem un estudi detallat dels treballs relacionats i discutim les aportacions o millores realitzades en els resultats existents. Finalment, el capítol 6 presenta les conclusions i indica els treballs que caldrà realitzar en el futur. També presentem alguns del articles de recerca que es deriven de la realització d'aquest projecte.In the present work we want to study automata both from an algebraic perspective and a coalgebraic one. We want to exploit the dual nature of these objects and present a unifying framework to explain and extend some recent results in automata theory. Accordingly, Section 2 contains background material and definitions to keep the work as self-contained as possible. Thus, the notions of algebra and coalgebra for endofunctors are presented. We also introduce some basic concepts on monoids and languages. In this Chapter we also introduce the notions of deterministic and non-deterministic automata, homomorphisms and bisimulations of automata and the product and coproduct of these structures. Finally, we recall some basic notions of lattice theory. From the algebraic perspective, automata are algebras with unary operations. In this context, an equation is just a pair of words, and it holds in an automaton if for every initial state, the states reached from that state by both words are the same. It can be shown that, for a given automaton, we can construct the largest set of equations it satifies, which turns out to be a congruence on the free monoid on the input alphabet. We use this construction to define the free automaton associated to a given automaton, denoted by free. Coalgebraically, an automaton is a transition system with final states. A coequation is then a set of languages and it is satisfied by an automaton if, for every possible observation (colouring the states as either final or not) the language accepted by the automaton is within the specified coequation. Intuitively, coequations can be thought of as behaviours, or pattern specifications that a coalgebra is supposed to have. As we did before, for a given automaton, we can construct the smallest set of coequations it satifies, which turns out to be a special subset on the set of all languages over the input alphabet. We use this construction to define the cofree automaton associated to a given automaton, denoted by cofree. These constructions based on equations and coequations are proved to be functorial. In Chapter 3 we have established a new duality result between congruence quotients of the free monoid and its set of coequations, what we called preformations of languages, which are complete atomic boolean algebras closed under derivatives. This duality result does not impose any restriction on the size of the objects, therefore infinite objects are allowed. Chapter 3 is based on the following papers: - J.J.M.M. Rutten, A. Ballester-Bolinches, and E. Cosme-Llópez. Varieties and covarieties of languages (preliminary version). In D. Kozen and M. Mislove, editors, Proceedings of MFPS XXIX, volume 298 of Electron. Notes Theor. Comput. Sci., pages 7–28, 2013. - A. Ballester-Bolinches, E. Cosme-Llópez, and J. Rutten. The dual equivalence of equations and coequations for automata. Information and Computation, 244:49 – 75, 2015. This duality result is used in Chapter 4 to present a renewed approach to Eilenberg's variety theorem. In the first place, we introduce an equivalent description based on equations and coequations of the original notion of variety of regular language, originally introduced by Eilenberg. This description is one of the best examples of the expressiveness power of the aforementioned functors free and cofree. A suitable adaptation of this construction allows us to present an Eilenberg-like result for formations of (non-necessarily finite) monoids. In our case, we first prove that formations of monoids are in one-to-one correspondence with formations of congruences. A second step in our proof relates formations of congruences and formations of languages. All in all, these three concepts are shown to be equivalent Formations of monoids -- Formations of congruences -- Formations of languages The first correspondence seems to be completely new and relates formations of monoids to filters of congruences on every possible free monoid. The last correspondence is one of the best possible examples of application of the duality theorem presented in Chapter 3. We also give an application of this equivalence to the case of relatively disjunctive languages. These theorems can be slightly adapted to cover the case of varieties of monoids in the sense of Birkhoff. We discuss this particular case at the end of the Chapter 4. The results of this Chapter have been submitted to a journal for its possible publication under the title - A. Ballester-Bolinches, E. Cosme-Llópez, R. Esteban-Romero, and J. Rutten. Formations of monoids, congruences, and formal languages. 2015. Chapter 5 is completely devoted to the study of the final object associated to non-deterministic automata. In general, the techniques applied in Chapter 5 differ from those presented in Chapters 3 and 4. Consequently, at the beginning of this chapter we introduce some basic background on bisimulations and final objects. Our main result is presented in Theorem 5.17 which describes the final non-deterministic automaton with the help of structures based on languages. Hereafter, we relate other descriptions of the final non-deterministic automaton with our construction. Chapter 5 is based on the following paper: - A. Ballester-Bolinches, E. Cosme-Llópez, and R. Esteban-Romero. A description based on languages of the final non-deterministic automaton. Theor. Comput. Sci., 536(0):1 – 20, 2014. Certainly, the point of view that we adopt throughout this work has been explored in some other references too. Therefore, at the end of each Chapter, we present a detailed study of the related work and how our work subsumes or improves the existing results. Finally, Chapter 6 sets out the conclusions and indicates future work. We also present some of the derived research papers we have made during the realisation of this project

The deep space network

The facilities, programming system, and monitor and control system for the deep space network are described. Ongoing planetary and interplanetary flight projects are reviewed, along with tracking and ground-based navigation, communications, and network and facility engineering

Foundations of Software Science and Computation Structures

This open access book constitutes the proceedings of the 22nd International Conference on Foundations of Software Science and Computational Structures, FOSSACS 2019, which took place in Prague, Czech Republic, in April 2019, held as part of the European Joint Conference on Theory and Practice of Software, ETAPS 2019. The 29 papers presented in this volume were carefully reviewed and selected from 85 submissions. They deal with foundational research with a clear significance for software science

Optimizing Automata Learning via Monads

Automata learning has been successfully applied in the verification of hardware and software. The size of the automaton model learned is a bottleneck for scalability, and hence optimizations that enable learning of compact representations are important. This paper exploits monads, both as a mathematical structure and a programming construct, to design, prove correct, and implement a wide class of such optimizations. The former perspective on monads allows us to develop a new algorithm and accompanying correctness proofs, building upon a general framework for automata learning based on category theory. The new algorithm is parametric on a monad, which provides a rich algebraic structure to capture non-determinism and other side-effects. We show that our approach allows us to uniformly capture existing algorithms, develop new ones, and add optimizations. The latter perspective allows us to effortlessly translate the theory into practice: we provide a Haskell library implementing our general framework, and we show experimental results for two specific instances: non-deterministic and weighted automata

Q(sqrt(-3))-Integral Points on a Mordell Curve

We use an extension of quadratic Chabauty to number fields,recently developed by the author with Balakrishnan, Besser and M ̈uller,combined with a sieving technique, to determine the integral points overQ(√−3) on the Mordell curve y2 = x3 − 4