764 research outputs found
Normal, Abby Normal, Prefix Normal
A prefix normal word is a binary word with the property that no substring has
more 1s than the prefix of the same length. This class of words is important in
the context of binary jumbled pattern matching. In this paper we present
results about the number of prefix normal words of length , showing
that for some and
. We introduce efficient
algorithms for testing the prefix normal property and a "mechanical algorithm"
for computing prefix normal forms. We also include games which can be played
with prefix normal words. In these games Alice wishes to stay normal but Bob
wants to drive her "abnormal" -- we discuss which parameter settings allow
Alice to succeed.Comment: Accepted at FUN '1
Reconstruction of Trees from Jumbled and Weighted Subtrees
Let T be an edge-labeled graph, where the labels are from a finite alphabet Sigma. For a subtree U of T the Parikh vector of U is a vector of length |Sigma| which specifies the multiplicity of each label in U. We ask when T can be reconstructed from the multiset of Parikh vectors of all its subtrees, or all of its paths, or all of its maximal paths. We consider the analogous problems for weighted trees. We show how several well-known reconstruction problems on labeled strings, weighted strings and point sets on a line can be included in this framework. We present reconstruction algorithms and non-reconstructibility results, and extend the polynomial method, previously applied to jumbled strings [Acharya et al., SIAM J. on Discr. Math, 2015] and weighted strings [Bansal et al., CPM 2004], to deal with general trees and special tree classes
On the Parikh-de-Bruijn grid
We introduce the Parikh-de-Bruijn grid, a graph whose vertices are
fixed-order Parikh vectors, and whose edges are given by a simple shift
operation. This graph gives structural insight into the nature of sets of
Parikh vectors as well as that of the Parikh set of a given string. We show its
utility by proving some results on Parikh-de-Bruijn strings, the abelian analog
of de-Bruijn sequences.Comment: 18 pages, 3 figures, 1 tabl
Bubble-Flip---A New Generation Algorithm for Prefix Normal Words
We present a new recursive generation algorithm for prefix normal words.
These are binary strings with the property that no substring has more 1s than
the prefix of the same length. The new algorithm uses two operations on binary
strings, which exploit certain properties of prefix normal words in a smart
way. We introduce infinite prefix normal words and show that one of the
operations used by the algorithm, if applied repeatedly to extend the string,
produces an ultimately periodic infinite word, which is prefix normal.
Moreover, based on the original finite word, we can predict both the length and
the density of an ultimate period of this infinite word.Comment: 30 pages, 3 figures, accepted in Theoret. Comp. Sc.. This is the
journal version of the paper with the same title at LATA 2018 (12th
International Conference on Language and Automata Theory and Applications,
Tel Aviv, April 9-11, 2018
Algorithms for Jumbled Pattern Matching in Strings
The Parikh vector p(s) of a string s is defined as the vector of
multiplicities of the characters. Parikh vector q occurs in s if s has a
substring t with p(t)=q. We present two novel algorithms for searching for a
query q in a text s. One solves the decision problem over a binary text in
constant time, using a linear size index of the text. The second algorithm, for
a general finite alphabet, finds all occurrences of a given Parikh vector q and
has sub-linear expected time complexity; we present two variants, which both
use a linear size index of the text.Comment: 18 pages, 9 figures; article accepted for publication in the
International Journal of Foundations of Computer Scienc
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings
Important papers have appeared recently on the problem of indexing binary strings for jumbled pattern matching, and further lowering the time bounds in terms of the input size would now be a breakthrough with broad implications. We can still make progress on the problem, however, by considering other natural parameters. Badkobeh et al. (IPL, 2013) and Amir et al. (TCS, 2016) gave algorithms that index a binary string in O(n + r^2 log r) time, where n is the length and r is the number of runs, and Giaquinta and Grabowski (IPL, 2013) gave one that runs in O(n + r^2) time. In this paper we propose a new and very simple algorithm that also runs in O(n + r^2) time and can be extended either so that the index returns the position of a match (if there is one), or so that the algorithm uses only O(n) bits of space instead of O(n) words
Reconstruction of Trees from Jumbled and Weighted Subtrees
Let T be an edge-labeled graph, where the labels are from a finite alphabet Sigma. For a subtree U of T the Parikh vector of U is a vector of length |Sigma| which specifies the multiplicity of each label in U. We ask when T can be reconstructed from the multiset of Parikh vectors of all its subtrees, or all of its paths, or all of its maximal paths. We consider the analogous problems for weighted trees. We show how several well-known reconstruction problems on labeled strings, weighted strings and point sets on a line can be included in this framework. We present reconstruction algorithms and non-reconstructibility results, and extend the polynomial method, previously applied to jumbled strings [Acharya et al., SIAM J. on Discr. Math, 2015] and weighted strings [Bansal et al., CPM 2004], to deal with general trees and special tree classes
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