Performance analysis of selected hypervisors (Virtual Machine Monitors - VMMs)

Virtualization of operating systems and network infrastructure plays an important role in current IT projects. With the number of services running on different hardware resources it is easy to provide availability, security and efficiency using virtualizers. All virtualization vendors claim that their hypervisor (virtual machine monitor - VMM) is better than their competitors. In this paper we evaluate performance of different solutions: proprietary software products (Hyper-V, ESXi, OVM, VirtualBox), and open source (Xen). We are using standard benchmark tools to compare efficiency of main hardware components, i.e. CPU (nbench), NIC (netperf), storage (Filebench), memory (ramspeed). Results of each tests are presented

Understanding the Performance of Low Power Raspberry Pi Cloud for Big Data

Nowadays, Internet-of-Things (IoT) devices generate data at high speed and large volume. Often the data require real-time processing to support high system responsiveness which can be supported by localised Cloud and/or Fog computing paradigms. However, there are considerably large deployments of IoT such as sensor networks in remote areas where Internet connectivity is sparse, challenging the localised Cloud and/or Fog computing paradigms. With the advent of the Raspberry Pi, a credit card-sized single board computer, there is a great opportunity to construct low-cost, low-power portable cloud to support real-time data processing next to IoT deployments. In this paper, we extend our previous work on constructing Raspberry Pi Cloud to study its feasibility for real-time big data analytics under realistic application-level workload in both native and virtualised environments. We have extensively tested the performance of a single node Raspberry Pi 2 Model B with httperf and a cluster of 12 nodes with Apache Spark and HDFS (Hadoop Distributed File System). Our results have demonstrated that our portable cloud is useful for supporting real-time big data analytics. On the other hand, our results have also unveiled that overhead for CPU-bound workload in virtualised environment is surprisingly high, at 67.2%. We have found that, for big data applications, the virtualisation overhead is fractional for small jobs but becomes more significant for large jobs, up to 28.6%

Performance modelling and optimization for video-analytic algorithms in a cloud-like environment using machine learning

CCTV cameras produce a large amount of video surveillance data per day, and analysing them require the use of significant computing resources that often need to be scalable. The emergence of the Hadoop distributed processing framework has had a significant impact on various data intensive applications as the distributed computed based processing enables an increase of the processing capability of applications it serves. Hadoop is an open source implementation of the MapReduce programming model. It automates the operation of creating tasks for each function, distribute data, parallelize executions and handles machine failures that reliefs users from the complexity of having to manage the underlying processing and only focus on building their application. It is noted that in a practical deployment the challenge of Hadoop based architecture is that it requires several scalable machines for effective processing, which in turn adds hardware investment cost to the infrastructure. Although using a cloud infrastructure offers scalable and elastic utilization of resources where users can scale up or scale down the number of Virtual Machines (VM) upon requirements, a user such as a CCTV system operator intending to use a public cloud would aspire to know what cloud resources (i.e. number of VMs) need to be deployed so that the processing can be done in the fastest (or within a known time constraint) and the most cost effective manner. Often such resources will also have to satisfy practical, procedural and legal requirements. The capability to model a distributed processing architecture where the resource requirements can be effectively and optimally predicted will thus be a useful tool, if available. In literature there is no clear and comprehensive modelling framework that provides proactive resource allocation mechanisms to satisfy a user's target requirements, especially for a processing intensive application such as video analytic. In this thesis, with the hope of closing the above research gap, novel research is first initiated by understanding the current legal practices and requirements of implementing video surveillance system within a distributed processing and data storage environment, since the legal validity of data gathered or processed within such a system is vital for a distributed system's applicability in such domains. Subsequently the thesis presents a comprehensive framework for the performance ii modelling and optimization of resource allocation in deploying a scalable distributed video analytic application in a Hadoop based framework, running on virtualized cluster of machines. The proposed modelling framework investigates the use of several machine learning algorithms such as, decision trees (M5P, RepTree), Linear Regression, Multi Layer Perceptron(MLP) and the Ensemble Classifier Bagging model, to model and predict the execution time of video analytic jobs, based on infrastructure level as well as job level parameters. Further in order to propose a novel framework for the allocate resources under constraints to obtain optimal performance in terms of job execution time, we propose a Genetic Algorithms (GAs) based optimization technique. Experimental results are provided to demonstrate the proposed framework's capability to successfully predict the job execution time of a given video analytic task based on infrastructure and input data related parameters and its ability determine the minimum job execution time, given constraints of these parameters. Given the above, the thesis contributes to the state-of-art in distributed video analytics, design, implementation, performance analysis and optimisation

Elasticity Measurement in CaaS Environments - Extending the Existing BUNGEE Elasticity Benchmark to AWS\u27s Elastic Container Service

Rapid elasticity and automatic scaling are core concepts of most current cloud computing systems. Elasticity describes how well and how fast cloud systems adapt to increases and decreases in workload. In parallel, software architectures are moving towards employing containerised microservices running on systems managed by container orchestration platforms. Cloud users who employ such container-based systems may want to compare the elasticity of different systems or system settings to ensure rapid elasticity and maintain service level objectives while avoiding over-provisioning. Previous research has established a variety of metrics to measure elasticity. Some existing benchmark tools are designed to measure elasticity in “Infrastructure as a Service” (IaaS) systems, but no research exists to date for measuring elasticity in systems based on containers and container orchestration. In this dissertation, an existing benchmark designed for IaaS systems, the BUNGEE benchmark developed at the University of Würzburg, was extended to be applicable to Amazon’s Elastic Container Service, a container-based cloud system. An experiment was conducted to test if the extension of the BUNGEE benchmark described in this dissertation delivers reproducible results and is therefore valid. For validation, the crucial phase of the benchmark - the system analysis phase - was run 32 times. It was established with statistical tests if the results vary by more than the acceptable level. Results indicate that there is some amount of variability, but it does not exceed the acceptable level and is consistent with the amount of performance variability encountered by other researchers in Amazon’s cloud systems. Therefore, it is concluded that the BUNGEE benchmark is likely applicable to container-based cloud systems. However, some parameters and configuration settings specific to container orchestration systems were identified that could impede reproducibility of results and should be considered in future experiments

Exploiting Parallel R in the Cloud with SPRINT

BACKGROUND: Advances in DNA Microarray devices and next-generation massively parallel DNA sequencing platforms have led to an exponential growth in data availability but the arising opportunities require adequate computing resources. High Performance Computing (HPC) in the Cloud offers an affordable way of meeting this need. OBJECTIVES: Bioconductor, a popular tool for high-throughput genomic data analysis, is distributed as add-on modules for the R statistical programming language but R has no native capabilities for exploiting multi-processor architectures. SPRINT is an R package that enables easy access to HPC for genomics researchers. This paper investigates: setting up and running SPRINT-enabled genomic analyses on Amazon’s Elastic Compute Cloud (EC2), the advantages of submitting applications to EC2 from different parts of the world and, if resource underutilization can improve application performance. METHODS: The SPRINT parallel implementations of correlation, permutation testing, partitioning around medoids and the multi-purpose papply have been benchmarked on data sets of various size on Amazon EC2. Jobs have been submitted from both the UK and Thailand to investigate monetary differences. RESULTS: It is possible to obtain good, scalable performance but the level of improvement is dependent upon the nature of algorithm. Resource underutilization can further improve the time to result. End-user’s location impacts on costs due to factors such as local taxation. Conclusions: Although not designed to satisfy HPC requirements, Amazon EC2 and cloud computing in general provides an interesting alternative and provides new possibilities for smaller organisations with limited funds

Performance Evaluation of LINQ to HPC and Hadoop for Big Data

There is currently considerable enthusiasm around the MapReduce paradigm, and the distributed computing paradigm for analysis of large volumes of data. The Apache Hadoop is the most popular open source implementation of MapReduce model and LINQ to HPC is Microsoft\u27s alternative to open source Hadoop. In this thesis, the performance of LINQ to HPC and Hadoop are compared using different benchmarks. To this end, we identified four benchmarks (Grep, Word Count, Read and Write) that we have run on LINQ to HPC as well as on Hadoop. For each benchmark, we measured each system’s performance metrics (Execution Time, Average CPU utilization and Average Memory utilization) for various degrees of parallelism on clusters of different sizes. Results revealed some interesting trade-offs. For example, LINQ to HPC performed better on three out of the four benchmarks (Grep, Read and Write), whereas Hadoop performed better on the Word Count benchmark. While more research that is extensive has focused on Hadoop, there are not many references to similar research on the LINQ to HPC platform, which is slowly evolving during the writing of this thesis

Bioinformatics on the Cloud Computing Platform Azure

We discuss the applicability of the Microsoft cloud computing platform, Azure, for bioinformatics. We focus on the usability of the resource rather than its performance. We provide an example of how R can be used on Azure to analyse a large amount of microarray expression data deposited at the public database ArrayExpress. We provide a walk through to demonstrate explicitly how Azure can be used to perform these analyses in Appendix S1 and we offer a comparison with a local computation. We note that the use of the Platform as a Service (PaaS) offering of Azure can represent a steep learning curve for bioinformatics developers who will usually have a Linux and scripting language background. On the other hand, the presence of an additional set of libraries makes it easier to deploy software in a parallel (scalable) fashion and explicitly manage such a production run with only a few hundred lines of code, most of which can be incorporated from a template. We propose that this environment is best suited for running stable bioinformatics software by users not involved with its development. © 2014 Shanahan et al