Data integration through service-based mediation for web-enabled information systems

The Web and its underlying platform technologies have often been used to integrate existing software and information systems. Traditional techniques for data representation and transformations between documents are not sufficient to support a flexible and maintainable data integration solution that meets the requirements of modern complex Web-enabled software and information systems. The difficulty arises from the high degree of complexity of data structures, for example in business and technology applications, and from the constant change of data and its representation. In the Web context, where the Web platform is used to integrate different organisations or software systems, additionally the problem of heterogeneity arises. We introduce a specific data integration solution for Web applications such as Web-enabled information systems. Our contribution is an integration technology framework for Web-enabled information systems comprising, firstly, a data integration technique based on the declarative specification of transformation rules and the construction of connectors that handle the integration and, secondly, a mediator architecture based on information services and the constructed connectors to handle the integration process

An adaptive service oriented architecture: Automatically solving interoperability problems.

Organizations desire to be able to easily cooperate with other companies and still be flexible. The IT infrastructure used by these companies should facilitate these wishes. Service-Oriented Architecture (SOA) and Autonomic Computing (AC) were introduced in order to realize such an infrastructure, however both have their shortcomings and do not fulfil these wishes. This dissertation addresses these shortcomings and presents an approach for incorporating (self-) adaptive behavior in (Web) services. A conceptual foundation of adaptation is provided and SOA is extended to incorporate adaptive behavior, called Adaptive Service Oriented Architecture (ASOA). To demonstrate our conceptual framework, we implement it to address a crucial aspect of distributed systems, namely interoperability. In particular, we study the situation of a service orchestrator adapting itself to evolving service providers.

Explorative search of distributed bio-data to answer complex biomedical questions

Background The huge amount of biomedical-molecular data increasingly produced is providing scientists with potentially valuable information. Yet, such data quantity makes difficult to find and extract those data that are most reliable and most related to the biomedical questions to be answered, which are increasingly complex and often involve many different biomedical-molecular aspects. Such questions can be addressed only by comprehensively searching and exploring different types of data, which frequently are ordered and provided by different data sources. Search Computing has been proposed for the management and integration of ranked results from heterogeneous search services. Here, we present its novel application to the explorative search of distributed biomedical-molecular data and the integration of the search results to answer complex biomedical questions. Results A set of available bioinformatics search services has been modelled and registered in the Search Computing framework, and a Bioinformatics Search Computing application (Bio-SeCo) using such services has been created and made publicly available at http://www.bioinformatics.deib.polimi.it/bio-seco/seco/. It offers an integrated environment which eases search, exploration and ranking-aware combination of heterogeneous data provided by the available registered services, and supplies global results that can support answering complex multi-topic biomedical questions. Conclusions By using Bio-SeCo, scientists can explore the very large and very heterogeneous biomedical-molecular data available. They can easily make different explorative search attempts, inspect obtained results, select the most appropriate, expand or refine them and move forward and backward in the construction of a global complex biomedical query on multiple distributed sources that could eventually find the most relevant results. Thus, it provides an extremely useful automated support for exploratory integrated bio search, which is fundamental for Life Science data driven knowledge discovery

An adaptive service oriented architecture:Automatically solving interoperability problems

Organizations desire to be able to easily cooperate with other companies and still be flexible. The IT infrastructure used by these companies should facilitate these wishes. Service-Oriented Architecture (SOA) and Autonomic Computing (AC) were introduced in order to realize such an infrastructure, however both have their shortcomings and do not fulfil these wishes. This dissertation addresses these shortcomings and presents an approach for incorporating (self-) adaptive behavior in (Web) services. A conceptual foundation of adaptation is provided and SOA is extended to incorporate adaptive behavior, called Adaptive Service Oriented Architecture (ASOA). To demonstrate our conceptual framework, we implement it to address a crucial aspect of distributed systems, namely interoperability. In particular, we study the situation of a service orchestrator adapting itself to evolving service providers.

Design Approach to Unified Service API Modeling for Semantic Interoperability of Cross-enterprise Vehicle Applications

This work was partially supported by Ministry of Education, Youth and Sports of the Czech Republic, university specific research, project SGS-2019-018 Processing of heterogeneous data and its specialized applications

Model morphisms (MoMo) to enable language independent information models and interoperable business networks

MSc. Dissertation presented at Faculdade de Ciências e Tecnologia of Universidade Nova de Lisboa to obtain the Master degree in Electrical and Computer EngineeringWith the event of globalisation, the opportunities for collaboration became more evident with the effect of enlarging business networks. In such conditions, a key for enterprise success is a reliable communication with all the partners. Therefore, organisations have been searching for flexible integrated environments to better manage their services and product life cycle, where their software applications could be easily integrated independently of the platform in use. However, with so many different information models and implementation standards being used, interoperability problems arise. Moreover,organisations are themselves at different technological maturity levels, and the solution that might be good for one, can be too advanced for another, or vice-versa. This dissertation responds to the above needs, proposing a high level meta-model to be used at the entire business network, enabling to abstract individual models from their specificities and increasing language independency and interoperability, while keeping all the enterprise legacy software‟s integrity intact. The strategy presented allows an incremental mapping construction, to achieve a gradual integration. To accomplish this, the author proposes Model Driven Architecture (MDA) based technologies for the development of traceable transformations and execution of automatic Model Morphisms

Using ontology and semantic web services to support modeling in systems biology

This thesis addresses the problem of collaboration among experimental biologists and modelers in the study of systems biology by using ontology and Semantic Web Services techniques. Modeling in systems biology is concerned with using experimental information and mathematical methods to build quantitative models across different biological scales. This requires interoperation among various knowledge sources and services. Ontology and Semantic Web Services potentially provide an infrastructure to meet this requirement. In our study, we propose an ontology-centered framework within the Semantic Web infrastructure that aims at standardizing various areas of knowledge involved in the biological modeling processes. In this framework, first we specify an ontology-based meta-model for building biological models. This meta-model supports using shared biological ontologies to annotate biological entities in the models, allows semantic queries and automatic discoveries, enables easy model reuse and composition, and serves as a basis to embed external knowledge. We also develop means of transforming biological data sources and data analysis methods into Web Services. These Web Services can then be composed together to perform parameterization in biological modeling. The knowledge of decision-making and workflow of parameterization processes are then recorded by the semantic descriptions of these Web Services, and embedded in model instances built on our proposed meta-model. We use three cases of biological modeling to evaluate our framework. By examining our ontology-centered framework in practice, we conclude that by using ontology to represent biological models and using Semantic Web Services to standardize knowledge components in modeling processes, greater capabilities of knowledge sharing, reuse and collaboration can be achieved. We also conclude that ontology-based biological models with formal semantics are essential to standardize knowledge in compliance with the Semantic Web vision