A Study of Application-awareness in Software-defined Data Center Networks

A data center (DC) has been a fundamental infrastructure for academia and industry for many years. Applications in DC have diverse requirements on communication. There are huge demands on data center network (DCN) control frameworks (CFs) for coordinating communication traffic. Simultaneously satisfying all demands is difficult and inefficient using existing traditional network devices and protocols. Recently, the agile software-defined Networking (SDN) is introduced to DCN for speeding up the development of the DCNCF. Application-awareness preserves the application semantics including the collective goals of communications. Previous works have illustrated that application-aware DCNCFs can much more efficiently allocate network resources by explicitly considering applications needs. A transfer application task level application-aware software-defined DCNCF (SDDCNCF) for OpenFlow software-defined DCN (SDDCN) for big data exchange is designed. The SDDCNCF achieves application-aware load balancing, short average transfer application task completion time, and high link utilization. The SDDCNCF is immediately deployable on SDDCN which consists of OpenFlow 1.3 switches. The Big Data Research Integration with Cyberinfrastructure for LSU (BIC-LSU) project adopts the SDDCNCF to construct a 40Gb/s high-speed storage area network to efficiently transfer big data for accelerating big data related researches at Louisiana State University. On the basis of the success of BIC-LSU, a coflow level application-aware SD- DCNCF for OpenFlow-based storage area networks, MinCOF, is designed. MinCOF incorporates all desirable features of existing coflow scheduling and routing frame- works and requires minimal changes on hosts. To avoid the architectural limitation of the OpenFlow SDN implementation, a coflow level application-aware SDDCNCF using fast packet processing library, Coflourish, is designed. Coflourish exploits congestion feedback assistances from SDN switches in the DCN to schedule coflows and can smoothly co-exist with arbitrary applications in a shared DCN. Coflourish is implemented using the fast packet processing library on an SDN switch, Open vSwitch with DPDK. Simulation and experiment results indicate that Coflourish effectively shortens average application completion time

OpenFog-Compliant Application-Aware Platform: A Kubernetes Extension

Distributed computing paradigms have evolved towards low latency and highly virtualized environments. Fog Computing, as its latest iteration, enables the usage of Cloud-like services closer to the generators and consumers of data. The processing in this layer is performed by Fog Applications, which are decomposed into smaller components following the microservice paradigm and encapsulated into containers. Current state-of-the-art container orchestrators can manage hundreds of simultaneous containers. However, Kubernetes, being the de facto standard, does not consider the application itself as a top-level entity, which limits its orchestration capabilities. This raises the need to rearchitect Kubernetes to benefit from application-awareness, which refers to an orchestration method optimized for managing the applications and the set of components that comprise them. Thus, this paper proposes an application-aware and OpenFog-compliant architecture that manages applications as first-level entities during their lifecycle. Furthermore, the proposed architecture allows the definition of organizational structures to group subordinated applications based on user-defined hierarchies. This logical structuring makes it possible to outline how orchestration should be shaped to reflect the operating model of a system or an organization. The proposed architecture is implemented as a Kubernetes extension and provided as an operator.This research was funded by the project PES18/48 funded by the University of the Basque Country (UPV/EHU) and by the PhD fellowship granted under the frame of the PIF 2022 call funded by the University of the Basque Country (UPV/EHU), grant number PIF22/188

High performance communication on reconfigurable clusters

High Performance Computing (HPC) has matured to where it is an essential third pillar, along with theory and experiment, in most domains of science and engineering. Communication latency is a key factor that is limiting the performance of HPC, but can be addressed by integrating communication into accelerators. This integration allows accelerators to communicate with each other without CPU interactions, and even bypassing the network stack. Field Programmable Gate Arrays (FPGAs) are the accelerators that currently best integrate communication with computation. The large number of Multi-gigabit Transceivers (MGTs) on most high-end FPGAs can provide high-bandwidth and low-latency inter-FPGA connections. Additionally, the reconfigurable FPGA fabric enables tight coupling between computation kernel and network interface. Our thesis is that an application-aware communication infrastructure for a multi-FPGA system makes substantial progress in solving the HPC communication bottleneck. This dissertation aims to provide an application-aware solution for communication infrastructure for FPGA-centric clusters. Specifically, our solution demonstrates application-awareness across multiple levels in the network stack, including low-level link protocols, router microarchitectures, routing algorithms, and applications. We start by investigating the low-level link protocol and the impact of its latency variance on performance. Our results demonstrate that, although some link jitter is always present, we can still assume near-synchronous communication on an FPGA-cluster. This provides the necessary condition for statically-scheduled routing. We then propose two novel router microarchitectures for two different kinds of workloads: a wormhole Virtual Channel (VC)-based router for workloads with dynamic communication, and a statically-scheduled Virtual Output Queueing (VOQ)-based router for workloads with static communication. For the first (VC-based) router, we propose a framework that generates application-aware router configurations. Our results show that, by adding application-awareness into router configuration, the network performance of FPGA clusters can be substantially improved. For the second (VOQ-based) router, we propose a novel offline collective routing algorithm. This shows a significant advantage over a state-of-the-art collective routing algorithm. We apply our communication infrastructure to a critical strong-scaling HPC kernel, the 3D FFT. The experimental results demonstrate that the performance of our design is faster than that on CPUs and GPUs by at least one order of magnitude (achieving strong scaling for the target applications). Surprisingly, the FPGA cluster performance is similar to that of an ASIC-cluster. We also implement the 3D FFT on another multi-FPGA platform: the Microsoft Catapult II cloud. Its performance is also comparable or superior to CPU and GPU HPC clusters. The second application we investigate is Molecular Dynamics Simulation (MD). We model MD on both FPGA clouds and clusters. We find that combining processing and general communication in the same device leads to extremely promising performance and the prospect of MD simulations well into the us/day range with a commodity cloud

Application Aware for Byzantine Fault Tolerance

Driven by the need for higher reliability of many distributed systems, various replication-based fault tolerance technologies have been widely studied. A prominent technology is Byzantine fault tolerance (BFT). BFT can help achieve high availability and trustworthiness by ensuring replica consistency despite the presence of hardware failures and malicious faults on a small portion of the replicas. However, most state-of-the-art BFT algorithms are designed for generic stateful applications that require the total ordering of all incoming requests and the sequential execution of such requests. In this dissertation research, we recognize that a straightforward application of existing BFT algorithms is often inappropriate for many practical systems: (1) not all incoming requests must be executed sequentially according to some total order and doing so would incur unnecessary (and often prohibitively high) runtime overhead and (2) a sequential execution of all incoming requests might violate the application semantics and might result in deadlocks for some applications. In the past four and half years of my dissertation research, I have focused on designing lightweight BFT solutions for a number of Web services applications (including a shopping cart application, an event stream processing application, Web service business activities (WS-BA), and Web service atomic transactions (WS-AT)) by exploiting application semantics. The main research challenge is to identify how to minimize the use of Byzantine agreement steps and enable concurrent execution of requests that are commutable or unrelated. We have shown that the runtime overhead can be significantly reduced by adopting our lightweight solutions. One limitation for our solutions is that it requires intimate knowledge on the application design and implementation, which may be expensive and error-prone to design such BFT solutions on complex applications. Recognizing this limitation, we investigated the use of Conflict-free Replicated Data Types (CRDTs) to

Application Aware for Byzantine Fault Tolerance

Driven by the need for higher reliability of many distributed systems, various replication-based fault tolerance technologies have been widely studied. A prominent technology is Byzantine fault tolerance (BFT). BFT can help achieve high availability and trustworthiness by ensuring replica consistency despite the presence of hardware failures and malicious faults on a small portion of the replicas. However, most state-of-the-art BFT algorithms are designed for generic stateful applications that require the total ordering of all incoming requests and the sequential execution of such requests. In this dissertation research, we recognize that a straightforward application of existing BFT algorithms is often inappropriate for many practical systems: (1) not all incoming requests must be executed sequentially according to some total order and doing so would incur unnecessary (and often prohibitively high) runtime overhead and (2) a sequential execution of all incoming requests might violate the application semantics and might result in deadlocks for some applications. In the past four and half years of my dissertation research, I have focused on designing lightweight BFT solutions for a number of Web services applications (including a shopping cart application, an event stream processing application, Web service business activities (WS-BA), and Web service atomic transactions (WS-AT)) by exploiting application semantics. The main research challenge is to identify how to minimize the use of Byzantine agreement steps and enable concurrent execution of requests that are commutable or unrelated. We have shown that the runtime overhead can be significantly reduced by adopting our lightweight solutions. One limitation for our solutions is that it requires intimate knowledge on the application design and implementation, which may be expensive and error-prone to design such BFT solutions on complex applications. Recognizing this limitation, we investigated the use of Conflict-free Replicated Data Types (CRDTs) to

Application Aware for Byzantine Fault Tolerance

Driven by the need for higher reliability of many distributed systems, various replication-based fault tolerance technologies have been widely studied. A prominent technology is Byzantine fault tolerance (BFT). BFT can help achieve high availability and trustworthiness by ensuring replica consistency despite the presence of hardware failures and malicious faults on a small portion of the replicas. However, most state-of-the-art BFT algorithms are designed for generic stateful applications that require the total ordering of all incoming requests and the sequential execution of such requests. In this dissertation research, we recognize that a straightforward application of existing BFT algorithms is often inappropriate for many practical systems: (1) not all incoming requests must be executed sequentially according to some total order and doing so would incur unnecessary (and often prohibitively high) runtime overhead and (2) a sequential execution of all incoming requests might violate the application semantics and might result in deadlocks for some applications. In the past four and half years of my dissertation research, I have focused on designing lightweight BFT solutions for a number of Web services applications (including a shopping cart application, an event stream processing application, Web service business activities (WS-BA), and Web service atomic transactions (WS-AT)) by exploiting application semantics. The main research challenge is to identify how to minimize the use of Byzantine agreement steps and enable concurrent execution of requests that are commutable or unrelated. We have shown that the runtime overhead can be significantly reduced by adopting our lightweight solutions. One limitation for our solutions is that it requires intimate knowledge on the application design and implementation, which may be expensive and error-prone to design such BFT solutions on complex applications. Recognizing this limitation, we investigated the use of Conflict-free Replicated Data Types (CRDTs) to

Mapping applications onto FPGA-centric clusters

High Performance Computing (HPC) is becoming increasingly important throughout science and engineering as ever more complex problems must be solved through computational simulations. In these large computational applications, the latency of communication between processing nodes is often the key factor that limits performance. An emerging alternative computer architecture that addresses the latency problem is the FPGA-centric cluster (FCC); in these systems, the devices (FPGAs) are directly interconnected and thus many layers of hardware and software are avoided. The result can be scalability not currently achievable with other technologies. In FCCs, FPGAs serve multiple functions: accelerator, network interface card (NIC), and router. Moreover, because FPGAs are configurable, there is substantial opportunity to tailor the router hardware to the application; previous work has demonstrated that such application-aware configuration can effect a substantial improvement in hardware efficiency. One constraint of FCCs is that it is convenient for their interconnect to be static, direct, and have a two or three dimensional mesh topology. Thus, applications that are naturally of a different dimensionality (have a different logical topology) from that of the FCC must be remapped to obtain optimal performance. In this thesis we study various aspects of the mapping problem for FCCs. There are two major research thrusts. The first is finding the optimal mapping of logical to physical topology. This problem has received substantial attention by both the theory community, where topology mapping is referred to as graph embedding, and by the High Performance Computing (HPC) community, where it is a question of process placement. We explore the implications of the different mapping strategies on communication behavior in FCCs, especially on resulting load imbalance. The second major research thrust is built around the hypothesis that applications that need to be remapped (due to differing logical and physical topologies) will have different optimal router configurations from those applications that do not. For example, due to remapping, some virtual or physical communication links may have little occupancy; therefore fewer resources should be allocated to them. Critical here is the creation of a new set of parameterized hardware features that can be configured to best handle load imbalances caused by remapping. These two thrusts form a codesign loop: certain mapping algorithms may be differentially optimal due to application-aware router reconfiguration that accounts for this mapping. This thesis has four parts. The first part introduces the background and previous work related to communication in general and, in particular, how it is implemented in FCCs. We build on previous work on application-aware router configuration. The second part introduces topology mapping mechanisms including those derived from graph embeddings and a greedy algorithm commonly used in HPC. In the third part, topology mappings are evaluated for performance and imbalance; we note that different mapping strategies lead to different imbalances both in the overall network and in each node. The final part introduces reconfigure router design that allocates resources based on different imbalance situations caused by different mapping behaviors

Data Locality Aware Strategy for Two-Phase Collective I/O

Abstract. This paper presents Locality-Aware Two-Phase (LATP) I/O, an opti-mization of the Two-Phase collective I/O technique from ROMIO, the most pop-ular MPI-IO implementation. In order to increase the locality of the file accesses, LATP employs the Linear Assignment Problem (LAP) for finding an optimal dis-tribution of data to processes, an aspect that is not considered in the original tech-nique. This assignment is based on the local data that each process stores and has as main purpose the reduction of the number of communication involved in the I/O collective operation and, therefore, the improvement of the global execution time. Compared with Two-Phase I/O, LATP I/O obtains important improvements in most of the considered scenarios.