Crop conditional Convolutional Neural Networks for massive multi-crop plant disease classification over cell phone acquired images taken on real field conditions

Convolutional Neural Networks (CNN) have demonstrated their capabilities on the agronomical field, especially for plant visual symptoms assessment. As these models grow both in the number of training images and in the number of supported crops and diseases, there exist the dichotomy of (1) generating smaller models for specific crop or, (2) to generate a unique multi-crop model in a much more complex task (especially at early disease stages) but with the benefit of the entire multiple crop image dataset variability to enrich image feature description learning. In this work we first introduce a challenging dataset of more than one hundred-thousand images taken by cell phone in real field wild conditions. This dataset contains almost equally distributed disease stages of seventeen diseases and five crops (wheat, barley, corn, rice and rape-seed) where several diseases can be present on the same picture. When applying existing state of the art deep neural network methods to validate the two hypothesised approaches, we obtained a balanced accuracy (BAC=0.92) when generating the smaller crop specific models and a balanced accuracy (BAC=0.93) when generating a single multi-crop model. In this work, we propose three different CNN architectures that incorporate contextual non-image meta-data such as crop information onto an image based Convolutional Neural Network. This combines the advantages of simultaneously learning from the entire multi-crop dataset while reducing the complexity of the disease classification tasks. The crop-conditional plant disease classification network that incorporates the contextual information by concatenation at the embedding vector level obtains a balanced accuracy of 0.98 improving all previous methods and removing 71% of the miss-classifications of the former methods

A Mixed Data-Based Deep Neural Network to Estimate Leaf Area Index in Wheat Breeding Trials

Remote and non-destructive estimation of leaf area index (LAI) has been a challenge in the last few decades as the direct and indirect methods available are laborious and time-consuming. The recent emergence of high-throughput plant phenotyping platforms has increased the need to develop new phenotyping tools for better decision-making by breeders. In this paper, a novel model based on artificial intelligence algorithms and nadir-view red green blue (RGB) images taken from a terrestrial high throughput phenotyping platform is presented. The model mixes numerical data collected in a wheat breeding field and visual features extracted from the images to make rapid and accurate LAI estimations. Model-based LAI estimations were validated against LAI measurements determined non-destructively using an allometric relationship obtained in this study. The model performance was also compared with LAI estimates obtained by other classical indirect methods based on bottom-up hemispherical images and gaps fraction theory. Model-based LAI estimations were highly correlated with ground-truth LAI. The model performance was slightly better than that of the hemispherical image-based method, which tended to underestimate LAI. These results show the great potential of the developed model for near real-time LAI estimation, which can be further improved in the future by increasing the dataset used to train the model

The role of mycotoxins in pig reproduction : a review

Mycotoxins are commonly present in feed for farm animals. Sows and gilts are highly susceptible to mycotoxins. This article presents a review describing the main mycotoxins encountered in pig feed which have a negative impact on sow fertility and reproduction. Consumption of feed that is contaminated with these mycotoxins may cause a variety of symptoms, depending on the type of mycotoxin, quantity and duration of exposure, as well as the health status and condition of the animal at the time of exposure. Two types of fungi are recognized, field fungi and storage fungi. Field fungi such as Fusarium spp., Aspergillus spp. and Claviceps spp. may produce toxins that lead to disturbed reproductive performance. Storage fungi occur if the humidity during storage is too high. In daily practice, the symptoms related to mycotoxicosis can occur at toxin concentrations below the detection limit. Knowledge of the effects of mycotoxins is expanding rapidly. Mycotoxins may still be present in feedstuffs despite negative analytical findings and because of the presence of hot spots in feed and or feedstuffs. Clinical symptoms can be very pronounced, making the diagnosis for the practitioner quite easy but in many cases the symptoms are vague and not at all present at herd level on a regular basis. The practitioner is in the first line of raising awareness in all parties whenever the first indication exists of a possible mycotoxicosis problem causing reproductive failure in breeding pigs. The problems can be resolved only if all parties involved in pig herd health take the necessary preventive measures and actions. The main toxins causing reproductive failure discussed in this article are aflatoxins, ergot alkaloids, trichothecenes and zearalenone

Automatic plant disease diagnosis using mobile capture devices, applied on a wheat use case

Disease diagnosis based on the detection of early symptoms is a usual threshold taken into account for integrated pest management strategies. Early phytosanitary treatment minimizes yield losses and increases the efficacy and efficiency of the treatments. However, the appearance of new diseases associated to new resistant crop variants complicates their early identification delaying the application of the appropriate corrective actions. The use of image based automated identification systems can leverage early detection of diseases among farmers and technicians but they perform poorly under real field conditions using mobile devices. A novel image processing algorithm based on candidate hot-spot detection in combination with statistical inference methods is proposed to tackle disease identification in wild conditions. This work analyses the performance of early identification of three European endemic wheat diseases – septoria, rust and tan spot. The analysis was done using 7 mobile devices and more than 3500 images captured in two pilot sites in Spain and Germany during 2014, 2015 and 2016. Obtained results reveal AuC (Area under the Receiver Operating Characteristic –ROC– Curve) metrics higher than 0.80 for all the analyzed diseases on the pilot tests under real conditions

A Review on Advances in Automated Plant Disease Detection

Plant diseases cause major yield and economic losses. To detect plant disease at early stages, selecting appropriate techniques is imperative as it affects the cost, diagnosis time, and accuracy. This research gives a comprehensive review of various plant disease detection methods based on the images used and processing algorithms applied. It systematically analyzes various traditional machine learning and deep learning algorithms used for processing visible and spectral range images, and comparatively evaluates the work done in literature in terms of datasets used, various image processing techniques employed, models utilized, and efficiency achieved. The study discusses the benefits and restrictions of each method along with the challenges to be addressed for rapid and accurate plant disease detection. Results show that for plant disease detection, deep learning outperforms traditional machine learning algorithms while visible range images are more widely used compared to spectral images

Classification Models for Plant Diseases Diagnosis: A Review

Plants are important source of our life. Crop production in a good figure and good quality is important to us. The diagnosis of a disease in a plant can be manual or automatic. But manual detection of disease in a plant is not always correct as sometimes it can be not be seen by naked eyes so an automatic method of detection of plant diseases should be there. It can make use of various artificial intelligence based or machine learning based methods. It is a tedious task as it needs to be identified in earlier stage so that it will not affect the entire crop. Disease affects all species of plant, both cultivated and wild. Plant disease occurrence and infection severity vary seasonally, regarding the environmental circumstances, the kinds of crops cultivated, and the existence of the pathogen. This review attempts to provide an exhaustive review of various plant diseases and its types, various methods to diagnose plant diseases and various classification models used so as to help researchers to identify the areas of scope where plant pathology can be improved

The C23A system, an exmaple of quantitative control of plant growth associated with a data base

The architecture of the C23A (Chambers de Culture Automatique en Atmosphere Artificielles) system for the controlled study of plant physiology is described. A modular plant growth chambers and associated instruments (I.R. CO2 analyser, Mass spectrometer and Chemical analyser); network of frontal processors controlling this apparatus; a central computer for the periodic control and the multiplex work of processors; and a network of terminal computers able to ask the data base for data processing and modeling are discussed. Examples of present results are given. A growth curve analysis study of CO2 and O2 gas exchanges of shoots and roots, and daily evolution of algal photosynthesis and of the pools of dissolved CO2 in sea water are discussed

An Automatic Rice Plant Disease Detection Model Built With Unstructured Data Using IMDT Tiling and CNN Cognitive Object Detection

Nowadays agriculture and processes are getting more intelligent mechanisms to improve the yield and reduce manual work. Smart agriculture provides numerous modern ideologies to farmers. But still, farmers face one important issue crop disease. Many researchers provide plenty of ways to recover and tackle the situation to come out of this problem. Therefore, they proceed with image processing to identify diseases from rice plant images. Farmers mainly face problems to take proper images for classification. Because of various reasons like various environmental factors, farmers ignorance, field size, capturing angle, device limitations, etc. are affecting the quality of the disease detection system, and these factors degrade overall performance. For this problem, introducing the Intelligent multi-dimensional tiling (IMDT) technique with an advanced convolution neural network with cognitive object detection (CNN-COD). IMDT technique developed with an intelligent expert system that adjusts input image size, capturing angles and other factors automatically. This advanced tiling technique supports to do the cropping and fluttering of input images for resizing. And CNN-COD model was used to calculate rice leaf width size and rescaled at the time of image segmentation with the Residual network (ResNet) model. Created dynamic tiled images are uniformly and scaled dimensional objects. These input values are used to train the CNN-COD rice plant disease, prediction model. Our proposed models were appraised on more than 4960 images which contain 8 various types of rice crop diseases. The experimental result portrayed out the CNN-COD model receives significant improvement in objection detection and image classification for the rice plant disease detection system. Mean average precision (MAP) values compared the CNN-COD model with the YOLOv4 model it got improved by 3.7% with the tiled input dataset

Early Detection of Stripe Rust in Winter Wheat Using Deep Residual Neural Networks

Stripe rust (Pst) is a major disease of wheat crops leading untreated to severe yield losses. The use of fungicides is often essential to control Pst when sudden outbreaks are imminent. Sensors capable of detecting Pst in wheat crops could optimize the use of fungicides and improve disease monitoring in high-throughput field phenotyping. Now, deep learning provides new tools for image recognition and may pave the way for new camera based sensors that can identify symptoms in early stages of a disease outbreak within the field. The aim of this study was to teach an image classifier to detect Pst symptoms in winter wheat canopies based on a deep residual neural network (ResNet). For this purpose, a large annotation database was created from images taken by a standard RGB camera that was mounted on a platform at a height of 2 m. Images were acquired while the platform was moved over a randomized field experiment with Pst-inoculated and Pst-free plots of winter wheat. The image classifier was trained with 224 × 224 px patches tiled from the original, unprocessed camera images. The image classifier was tested on different stages of the disease outbreak. At patch level the image classifier reached a total accuracy of 90%. To test the image classifier on image level, the image classifier was evaluated with a sliding window using a large striding length of 224 px allowing for fast test performance. At image level, the image classifier reached a total accuracy of 77%. Even in a stage with very low disease spreading (0.5%) at the very beginning of the Pst outbreak, a detection accuracy of 57% was obtained. Still in the initial phase of the Pst outbreak with 2 to 4% of Pst disease spreading, detection accuracy with 76% could be attained. With further optimizations, the image classifier could be implemented in embedded systems and deployed on drones, vehicles or scanning systems for fast mapping of Pst outbreaks