Color detection in dermoscopic images of pigmented skin lesions through computer vision techniques

This thesis offers an insight into skin cancer detection, focusing on the extraction of distinct features (color, namely) from potential melanoma lesions. The following document provides an outlook of melanoma analysis, as well as experimental results based on Matlab implementations. The relevance of the work carried out throughout this project resides in the specificity of the study: color is a key characteristic in melanoma inspection. It is usually linked to pattern analysis but seldom the sole object of research. Most lines of work in the field of skin cancer diagnosis associate color with other features such as texture, shape, asymmetry or pattern of the lesion. Studies cement this belief regarding the vital significance of color, as the number of colors in a lesion happens to be the most significant biomarker for determining malignancy. Different image processing techniques will be applied to build statistical models that shape the outcome of the prospective diagnosis. The purpose of the project is the development of an assisting tool able to detect the most prevalent colors in skin pigmented lesions, in order to give a probabilistic result. The strength of this idea lies in the resemblance to actual medical procedures; dermatologists examine color to diagnose melanoma. Simulating medical proceedings is a burgeoning trend in CAD systems because it renders the advancements in this field more likely to be accepted by the medical community. An additional motivation comes from real-life statistics: skin cancer is, by far, the most frequent type of cancer. Moreover, although melanoma is the least common form of skin cancer at only around 1% of all cases, the majority of deaths related to skin cancer are due to melanoma. Furthermore, the rate of melanoma occurrence is particularly high in Spain and has significantly increased in the last decade, hence the importance of reliable diagnosis that is not exclusively contingent on the specialist’s subjective judgment.Ingeniería de Sistemas Audiovisuale

Functional and structural MRI image analysis for brain glial tumors treatment

Cotutela con il Dipartimento di Biotecnologie e Scienze della Vita, Universiità degli Studi dell'Insubria.openThis Ph.D Thesis is the outcome of a close collaboration between the Center for Research in Image Analysis and Medical Informatics (CRAIIM) of the Insubria University and the Operative Unit of Neurosurgery, Neuroradiology and Health Physics of the University Hospital ”Circolo Fondazione Macchi”, Varese. The project aim is to investigate new methodologies by means of whose, develop an integrated framework able to enhance the use of Magnetic Resonance Images, in order to support clinical experts in the treatment of patients with brain Glial tumor. Both the most common uses of MRI technology for non-invasive brain inspection were analyzed. From the Functional point of view, the goal has been to provide tools for an objective reliable and non-presumptive assessment of the brain’s areas locations, to preserve them as much as possible at surgery. From the Structural point of view, methodologies for fully automatic brain segmentation and recognition of the tumoral areas, for evaluating the tumor volume, the spatial distribution and to be able to infer correlation with other clinical data or trace growth trend, have been studied. Each of the proposed methods has been thoroughly assessed both qualitatively and quantitatively. All the Medical Imaging and Pattern Recognition algorithmic solutions studied for this Ph.D. Thesis have been integrated in GliCInE: Glioma Computerized Inspection Environment, which is a MATLAB prototype of an integrated analysis environment that offers, in addition to all the functionality specifically described in this Thesis, a set of tools needed to manage Functional and Structural Magnetic Resonance Volumes and ancillary data related to the acquisition and the patient.openInformaticaPedoia, ValentinaPedoia, Valentin

Structure analysis and lesion detection from retinal fundus images

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University.Ocular pathology is one of the main health problems worldwide. The number of people with retinopathy symptoms has increased considerably in recent years. Early adequate treatment has demonstrated to be effective to avoid the loss of the vision. The analysis of fundus images is a non intrusive option for periodical retinal screening. Different models designed for the analysis of retinal images are based on supervised methods, which require of hand labelled images and processing time as part of the training stage. On the other hand most of the methods have been designed under the basis of specific characteristics of the retinal images (e.g. field of view, resolution). This compromises its performance to a reduce group of retinal image with similar features. For these reasons an unsupervised model for the analysis of retinal image is required, a model that can work without human supervision or interaction. And that is able to perform on retinal images with different characteristics. In this research, we have worked on the development of this type of model. The system locates the eye structures (e.g. optic disc and blood vessels) as first step. Later, these structures are masked out from the retinal image in order to create a clear field to perform the lesion detection. We have selected the Graph Cut technique as a base to design the retinal structures segmentation methods. This selection allows incorporating prior knowledge to constraint the searching for the optimal segmentation. Different link weight assignments were formulated in order to attend the specific needs of the retinal structures (e.g. shape). This research project has put to work together the fields of image processing and ophthalmology to create a novel system that contribute significantly to the state of the art in medical image analysis. This new knowledge provides a new alternative to address the analysis of medical images and opens a new panorama for researchers exploring this research area.Mexican National Council of Science and Technolog

Mining Extremes through Fuzzy Clustering

Archetypes are extreme points that synthesize data representing "pure" individual types. Archetypes are assigned by the most discriminating features of data points, and are almost always useful in applications when one is interested in extremes and not on commonalities. Recent applications include talent analysis in sports and science, fraud detection, profiling of users and products in recommendation systems, climate extremes, as well as other machine learning applications. The furthest-sum Archetypal Analysis (FS-AA) (Mørup and Hansen, 2012) and the Fuzzy Clustering with Proportional Membership (FCPM) (Nascimento, 2005) propose distinct models to find clusters with extreme prototypes. Even though the FCPM model does not impose its prototypes to lie in the convex hull of data, it belongs to the framework of data recovery from clustering (Mirkin, 2005), a powerful property for unsupervised cluster analysis. The baseline version of FCPM, FCPM-0, provides central prototypes whereas its smooth version, FCPM-2 provides extreme prototypes as AA archetypes. The comparative study between FS-AA and FCPM algorithms conducted in this dissertation covers the following aspects. First, the analysis of FS-AA on data recovery from clustering using a collection of 100 data sets of diverse dimensionalities, generated with a proper data generator (FCPM-DG) as well as 14 real world data. Second, testing the robustness of the clustering algorithms in the presence of outliers, with the peculiar behaviour of FCPM-0 on removing the proper number of prototypes from data. Third, a collection of five popular fuzzy validation indices are explored on accessing the quality of clustering results. Forth, the algorithms undergo a study to evaluate how different initializations affect their convergence as well as the quality of the clustering partitions. The Iterative Anomalous Pattern (IAP) algorithm allows to improve the convergence of FCPM algorithm as well as to fine-tune the level of resolution to look at clustering results, which is an advantage from FS-AA. Proper visualization functionalities for FS-AA and FCPM support the easy interpretation of the clustering results

Functional and structural MRI image analysis for brain glial tumors treatment

This Ph.D Thesis is the outcome of a close collaboration between the Center for Research in Image Analysis and Medical Informatics (CRAIIM) of the Insubria University and the Operative Unit of Neurosurgery, Neuroradiology and Health Physics of the University Hospital ”Circolo Fondazione Macchi”, Varese. The project aim is to investigate new methodologies by means of whose, develop an integrated framework able to enhance the use of Magnetic Resonance Images, in order to support clinical experts in the treatment of patients with brain Glial tumor. Both the most common uses of MRI technology for non-invasive brain inspection were analyzed. From the Functional point of view, the goal has been to provide tools for an objective reliable and non-presumptive assessment of the brain’s areas locations, to preserve them as much as possible at surgery. From the Structural point of view, methodologies for fully automatic brain segmentation and recognition of the tumoral areas, for evaluating the tumor volume, the spatial distribution and to be able to infer correlation with other clinical data or trace growth trend, have been studied. Each of the proposed methods has been thoroughly assessed both qualitatively and quantitatively. All the Medical Imaging and Pattern Recognition algorithmic solutions studied for this Ph.D. Thesis have been integrated in GliCInE: Glioma Computerized Inspection Environment, which is a MATLAB prototype of an integrated analysis environment that offers, in addition to all the functionality specifically described in this Thesis, a set of tools needed to manage Functional and Structural Magnetic Resonance Volumes and ancillary data related to the acquisition and the patient

Spatially adaptive semi‐supervised learning with Gaussian processes for hyperspectral data analysis

This paper presents a semi‐supervised learning algorithm called Gaussian process expectation‐maximization (GP‐EM), for classification of landcover based on hyperspectral data analysis. Model parameters for each land cover class are first estimated by a supervised algorithm using Gaussian process regressions to find spatially adaptive parameters, and the estimated parameters are then used to initialize a spatially adaptive mixture‐of‐Gaussians model. The mixture model is updated by expectation‐maximization iterations using the unlabeled data, and the spatially adaptive parameters for unlabeled instances are obtained by Gaussian process regressions with soft assignments. Spatially and temporally distant hyperspectral images taken from the Botswana area by the NASA EO‐1 satellite are used for experiments. Detailed empirical evaluations show that the proposed framework performs significantly better than all previously reported results by a wide variety of alternative approaches and algorithms on the same datasets. © 2011 Wiley Periodicals, Inc. Statistical Analysis and Data Mining 4: 358–371, 2011Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/87150/1/10119_ftp.pd