Abstract Acceleration in Linear relation analysis (extended version)

Linear relation analysis is a classical abstract interpretation based on an over-approximation of reachable numerical states of a program by convex polyhedra. Since it works with a lattice of infinite height, it makes use of a widening operator to enforce the convergence of fixed point computations. Abstract acceleration is a method that computes the precise abstract effect of loops wherever possible and uses widening in the general case. Thus, it improves both the precision and the efficiency of the analysis. This research report gives a comprehensive tutorial on abstract acceleration: its origins in Presburger-based acceleration including new insights w.r.t. the linear accelerability of linear transformations, methods for simple and nested loops, recent extensions, tools and applications, and a detailed discussion of related methods and future perspectives. This is the long version of a paper under submission

Generalization Strategies for the Verification of Infinite State Systems

We present a method for the automated verification of temporal properties of infinite state systems. Our verification method is based on the specialization of constraint logic programs (CLP) and works in two phases: (1) in the first phase, a CLP specification of an infinite state system is specialized with respect to the initial state of the system and the temporal property to be verified, and (2) in the second phase, the specialized program is evaluated by using a bottom-up strategy. The effectiveness of the method strongly depends on the generalization strategy which is applied during the program specialization phase. We consider several generalization strategies obtained by combining techniques already known in the field of program analysis and program transformation, and we also introduce some new strategies. Then, through many verification experiments, we evaluate the effectiveness of the generalization strategies we have considered. Finally, we compare the implementation of our specialization-based verification method to other constraint-based model checking tools. The experimental results show that our method is competitive with the methods used by those other tools. To appear in Theory and Practice of Logic Programming (TPLP).Comment: 24 pages, 2 figures, 5 table

Petri nets for systems and synthetic biology

We give a description of a Petri net-based framework for modelling and analysing biochemical pathways, which uni¯es the qualita- tive, stochastic and continuous paradigms. Each perspective adds its con- tribution to the understanding of the system, thus the three approaches do not compete, but complement each other. We illustrate our approach by applying it to an extended model of the three stage cascade, which forms the core of the ERK signal transduction pathway. Consequently our focus is on transient behaviour analysis. We demonstrate how quali- tative descriptions are abstractions over stochastic or continuous descrip- tions, and show that the stochastic and continuous models approximate each other. Although our framework is based on Petri nets, it can be applied more widely to other formalisms which are used to model and analyse biochemical networks

Algorithmic Verification of Continuous and Hybrid Systems

We provide a tutorial introduction to reachability computation, a class of computational techniques that exports verification technology toward continuous and hybrid systems. For open under-determined systems, this technique can sometimes replace an infinite number of simulations.Comment: In Proceedings INFINITY 2013, arXiv:1402.661

Stochastic hybrid system : modelling and verification

Hybrid systems now form a classical computational paradigm unifying discrete and continuous system aspects. The modelling, analysis and verification of these systems are very difficult. One way to reduce the complexity of hybrid system models is to consider randomization. The need for stochastic models has actually multiple motivations. Usually, when building models complete information is not available and we have to consider stochastic versions. Moreover, non-determinism and uncertainty are inherent to complex systems. The stochastic approach can be thought of as a way of quantifying non-determinism (by assigning a probability to each possible execution branch) and managing uncertainty. This is built upon to the - now classical - approach in algorithmics that provides polynomial complexity algorithms via randomization. In this thesis we investigate the stochastic hybrid systems, focused on modelling and analysis. We propose a powerful unifying paradigm that combines analytical and formal methods. Its applications vary from air traffic control to communication networks and healthcare systems. The stochastic hybrid system paradigm has an explosive development. This is because of its very powerful expressivity and the great variety of possible applications. Each hybrid system model can be randomized in different ways, giving rise to many classes of stochastic hybrid systems. Moreover, randomization can change profoundly the mathematical properties of discrete and continuous aspects and also can influence their interaction. Beyond the profound foundational and semantics issues, there is the possibility to combine and cross-fertilize techniques from analytic mathematics (like optimization, control, adaptivity, stability, existence and uniqueness of trajectories, sensitivity analysis) and formal methods (like bisimulation, specification, reachability analysis, model checking). These constitute the major motivations of our research. We investigate new models of stochastic hybrid systems and their associated problems. The main difference from the existing approaches is that we do not follow one way (based only on continuous or discrete mathematics), but their cross-fertilization. For stochastic hybrid systems we introduce concepts that have been defined only for discrete transition systems. Then, techniques that have been used in discrete automata now come in a new analytical fashion. This is partly explained by the fact that popular verification methods (like theorem proving) can hardly work even on probabilistic extensions of discrete systems. When the continuous dimension is added, the idea to use continuous mathematics methods for verification purposes comes in a natural way. The concrete contribution of this thesis has four major milestones: 1. A new and a very general model for stochastic hybrid systems; 2. Stochastic reachability for stochastic hybrid systems is introduced together with an approximating method to compute reach set probabilities; 3. Bisimulation for stochastic hybrid systems is introduced and relationship with reachability analysis is investigated. 4. Considering the communication issue, we extend the modelling paradigm

CHARDA: Causal Hybrid Automata Recovery via Dynamic Analysis

We propose and evaluate a new technique for learning hybrid automata automatically by observing the runtime behavior of a dynamical system. Working from a sequence of continuous state values and predicates about the environment, CHARDA recovers the distinct dynamic modes, learns a model for each mode from a given set of templates, and postulates causal guard conditions which trigger transitions between modes. Our main contribution is the use of information-theoretic measures (1)~as a cost function for data segmentation and model selection to penalize over-fitting and (2)~to determine the likely causes of each transition. CHARDA is easily extended with different classes of model templates, fitting methods, or predicates. In our experiments on a complex videogame character, CHARDA successfully discovers a reasonable over-approximation of the character's true behaviors. Our results also compare favorably against recent work in automatically learning probabilistic timed automata in an aircraft domain: CHARDA exactly learns the modes of these simpler automata.Comment: 7 pages, 2 figures. Accepted for IJCAI 201

Synthesising Strategy Improvement and Recursive Algorithms for Solving 2.5 Player Parity Games

2.5 player parity games combine the challenges posed by 2.5 player reachability games and the qualitative analysis of parity games. These two types of problems are best approached with different types of algorithms: strategy improvement algorithms for 2.5 player reachability games and recursive algorithms for the qualitative analysis of parity games. We present a method that - in contrast to existing techniques - tackles both aspects with the best suited approach and works exclusively on the 2.5 player game itself. The resulting technique is powerful enough to handle games with several million states