Metascheduling of HPC Jobs in Day-Ahead Electricity Markets

High performance grid computing is a key enabler of large scale collaborative computational science. With the promise of exascale computing, high performance grid systems are expected to incur electricity bills that grow super-linearly over time. In order to achieve cost effectiveness in these systems, it is essential for the scheduling algorithms to exploit electricity price variations, both in space and time, that are prevalent in the dynamic electricity price markets. In this paper, we present a metascheduling algorithm to optimize the placement of jobs in a compute grid which consumes electricity from the day-ahead wholesale market. We formulate the scheduling problem as a Minimum Cost Maximum Flow problem and leverage queue waiting time and electricity price predictions to accurately estimate the cost of job execution at a system. Using trace based simulation with real and synthetic workload traces, and real electricity price data sets, we demonstrate our approach on two currently operational grids, XSEDE and NorduGrid. Our experimental setup collectively constitute more than 433K processors spread across 58 compute systems in 17 geographically distributed locations. Experiments show that our approach simultaneously optimizes the total electricity cost and the average response time of the grid, without being unfair to users of the local batch systems.Comment: Appears in IEEE Transactions on Parallel and Distributed System

Deploying a Top-100 Supercomputer for Large Parallel Workloads: the Niagara Supercomputer

Niagara is currently the fastest supercomputer accessible to academics in Canada. It was deployed at the beginning of 2018 and has been serving the research community ever since. This homogeneous 60,000-core cluster, owned by the University of Toronto and operated by SciNet, was intended to enable large parallel jobs and has a measured performance of 3.02 petaflops, debuting at #53 in the June 2018 TOP500 list. It was designed to optimize throughput of a range of scientific codes running at scale, energy efficiency, and network and storage performance and capacity. It replaced two systems that SciNet operated for over 8 years, the Tightly Coupled System (TCS) and the General Purpose Cluster (GPC). In this paper we describe the transition process from these two systems, the procurement and deployment processes, as well as the unique features that make Niagara a one-of-a-kind machine in Canada.Comment: PEARC'19: "Practice and Experience in Advanced Research Computing", July 28-August 1, 2019, Chicago, IL, US

An Approach to Model Resources Rationalisation in Hybrid Clouds through Users Activity Characterisation

In recent years, some strategies (e.g., server consolidation by means of virtualisation techniques) helped the managers of large Information Technology (IT) infrastructures to limit, when possible, the use of hardware resources in order to provide reliable services and to reduce the Total Cost of Ownership (TCO) of such infrastructures. Moreover, with the advent of Cloud computing, a resource usage rationalisation can be pursued also for the users applications, if this is compatible with the Quality of Service (QoS) which must be guaranteed. In this perspective, modern datacenters are “elastic”, i.e., able to shrink or enlarge the number of local physical or virtual resources from private/public Clouds. Moreover, many of large computing environments are integrated in distributed computing environment as the grid and cloud infrastructures. In this document, we report some advances in the realisation of a utility, we named Adaptive Scheduling Controller (ASC) which, interacting with the datacenter resource manager, allows an effective and efficient usage of resources, also by means of users jobs classification. Here, we focus both on some data mining algorithms which allows to classify the users activity and on the mathematical formalisation of the functional used by ASC to find the most suitable configuration for the datacenter’s resource manager. The presented case study concerns the SCoPE infrastructure, which has a twofold role: local computing resources provider for the University of Naples Federico II and remote resources provider for both the Italian Grid Infrastructure (IGI) and the European Grid Infrastructure (EGI) Federated Cloud

Transparent Orchestration of Task-based Parallel Applications in Containers Platforms

This paper presents a framework to easily build and execute parallel applications in container-based distributed computing platforms in a user-transparent way. The proposed framework is a combination of the COMP Superscalar (COMPSs) programming model and runtime, which provides a straightforward way to develop task-based parallel applications from sequential codes, and containers management platforms that ease the deployment of applications in computing environments (as Docker, Mesos or Singularity). This framework provides scientists and developers with an easy way to implement parallel distributed applications and deploy them in a one-click fashion. We have built a prototype which integrates COMPSs with different containers engines in different scenarios: i) a Docker cluster, ii) a Mesos cluster, and iii) Singularity in an HPC cluster. We have evaluated the overhead in the building phase, deployment and execution of two benchmark applications compared to a Cloud testbed based on KVM and OpenStack and to the usage of bare metal nodes. We have observed an important gain in comparison to cloud environments during the building and deployment phases. This enables better adaptation of resources with respect to the computational load. In contrast, we detected an extra overhead during the execution, which is mainly due to the multi-host Docker networking.This work is partly supported by the Spanish Government through Programa Severo Ochoa (SEV-2015-0493), by the Spanish Ministry of Science and Technology through TIN2015-65316 project, by the Generalitat de Catalunya under contracts 2014-SGR-1051 and 2014-SGR-1272, and by the European Union through the Horizon 2020 research and innovation program under grant 690116 (EUBra-BIGSEA Project). Results presented in this paper were obtained using the Chameleon testbed supported by the National Science Foundation.Peer ReviewedPostprint (author's final draft

Simulation of networks of spiking neurons: A review of tools and strategies

We review different aspects of the simulation of spiking neural networks. We start by reviewing the different types of simulation strategies and algorithms that are currently implemented. We next review the precision of those simulation strategies, in particular in cases where plasticity depends on the exact timing of the spikes. We overview different simulators and simulation environments presently available (restricted to those freely available, open source and documented). For each simulation tool, its advantages and pitfalls are reviewed, with an aim to allow the reader to identify which simulator is appropriate for a given task. Finally, we provide a series of benchmark simulations of different types of networks of spiking neurons, including Hodgkin-Huxley type, integrate-and-fire models, interacting with current-based or conductance-based synapses, using clock-driven or event-driven integration strategies. The same set of models are implemented on the different simulators, and the codes are made available. The ultimate goal of this review is to provide a resource to facilitate identifying the appropriate integration strategy and simulation tool to use for a given modeling problem related to spiking neural networks.Comment: 49 pages, 24 figures, 1 table; review article, Journal of Computational Neuroscience, in press (2007

Predictive and distributed routing balancing (PR-DRB) : high speed interconnection networks

Current parallel applications running on clusters require the use of an interconnection network to perform communications among all computing nodes available. Imbalance of communications can produce network congestion, reducing throughput and increasing latency, degrading the overall system performance. On the other hand, parallel applications running on these networks posses representative stages which allow their characterization, as well as repetitive behavior that can be identified on the basis of this characterization. This work presents the Predictive and Distributed Routing Balancing (PR-DRB), a new method developed to gradually control network congestion, based on paths expansion, traffic distribution and effective traffic load, in order to maintain low latency values. PR-DRB monitors messages latencies on intermediate routers, makes decisions about alternative paths and record communication pattern information encountered during congestion situation. Based on the concept of applications repetitiveness, best solution recorded are reapplied when saved communication pattern re-appears. Traffic congestion experiments were conducted in order to evaluate the performance of the method, and improvements were observed.Les aplicacions paral·leles actuals en els Clústers requereixen l'ús d'una xarxa d'interconnexió per comunicar a tots els nodes de còmput disponibles. El desequilibri en la càrrega de comunicacions pot congestionar la xarxa, incrementant la latència i disminuint el throughput, degradant el rendiment total del sistema. D'altra banda, les aplicacions paral·leles que s'executen sobre aquestes xarxes contenen etapes representatives durant la seva execució les quals permeten caracteritzar-les, a més d'extraure un comportament repetitiu que pot ser identificat en base a aquesta caracterització. Aquest treball presenta el Balanceig Predictiu de Encaminament Distribuït (PR-DRB), un nou mètode desenvolupat per controlar la congestió a la xarxa en forma gradual, basat en l'expansió de camins, la distribució de trànsit i càrrega efectiva actual per tal de mantenir una latència baixa. PR-DRB monitoritza la latència dels missatges en els encaminadors, pren decisions sobre els camins alternatius a utilitzar i registra la informació de la congestió sobre la base del patró de comunicacions detectat, utilitzant com a concepte base la repetitivitat de les aplicacions per després tornar a aplicar la millor solució quan aquest patró es repeteixi. Experiments de trànsit amb congestió van ser portats a terme per avaluar el rendiment del mètode, els quals van mostrar la bondat del mateix.Las aplicaciones paralelas actuales en los Clústeres requieren el uso de una red de interconexión para comunicar a todos los nodos de cómputo disponibles. El desbalance en la carga de comunicaciones puede congestionar la red, incrementando la latencia y disminuyendo el throughput, degradando el rendimiento total del sistema. Por otro lado, las aplicaciones paralelas que corren sobre estas redes contienen etapas representativas durante su ejecución las cuales permiten caracterizarlas, además de un comportamiento repetitivo que puede ser identificado en base a dicha caracterización. Este trabajo presenta el Balanceo Predictivo de Encaminamiento Distribuido (PR-DRB), un nuevo método desarrollado para controlar la congestión en la red en forma gradual; basado en la expansión de caminos, la distribución de tráfico y carga efectiva actual, a fin de mantener una latencia baja. PR-DRB monitorea la latencia de los mensajes en los encaminadores, toma decisiones sobre los caminos alternativos a utilizar y registra la información de la congestión en base al patrón de comunicaciones detectado, usando como concepto base la repetitividad de las aplicaciones para luego volver a aplicar la mejor solución cuando dicho patrón se repita. Experimentos de tráfico con congestión fueron llevados a cabo para evaluar el rendimiento del método, los cuales mostraron la bondad del mismo