Adaptive Mesh Refinement for Coupled Elliptic-Hyperbolic Systems

We present a modification to the Berger and Oliger adaptive mesh refinement algorithm designed to solve systems of coupled, non-linear, hyperbolic and elliptic partial differential equations. Such systems typically arise during constrained evolution of the field equations of general relativity. The novel aspect of this algorithm is a technique of "extrapolation and delayed solution" used to deal with the non-local nature of the solution of the elliptic equations, driven by dynamical sources, within the usual Berger and Oliger time-stepping framework. We show empirical results demonstrating the effectiveness of this technique in axisymmetric gravitational collapse simulations. We also describe several other details of the code, including truncation error estimation using a self-shadow hierarchy, and the refinement-boundary interpolation operators that are used to help suppress spurious high-frequency solution components ("noise").Comment: 31 pages, 15 figures; replaced with published versio

A multiresolution space-time adaptive scheme for the bidomain model in electrocardiology

This work deals with the numerical solution of the monodomain and bidomain models of electrical activity of myocardial tissue. The bidomain model is a system consisting of a possibly degenerate parabolic PDE coupled with an elliptic PDE for the transmembrane and extracellular potentials, respectively. This system of two scalar PDEs is supplemented by a time-dependent ODE modeling the evolution of the so-called gating variable. In the simpler sub-case of the monodomain model, the elliptic PDE reduces to an algebraic equation. Two simple models for the membrane and ionic currents are considered, the Mitchell-Schaeffer model and the simpler FitzHugh-Nagumo model. Since typical solutions of the bidomain and monodomain models exhibit wavefronts with steep gradients, we propose a finite volume scheme enriched by a fully adaptive multiresolution method, whose basic purpose is to concentrate computational effort on zones of strong variation of the solution. Time adaptivity is achieved by two alternative devices, namely locally varying time stepping and a Runge-Kutta-Fehlberg-type adaptive time integration. A series of numerical examples demonstrates thatthese methods are efficient and sufficiently accurate to simulate the electrical activity in myocardial tissue with affordable effort. In addition, an optimalthreshold for discarding non-significant information in the multiresolution representation of the solution is derived, and the numerical efficiency and accuracy of the method is measured in terms of CPU time speed-up, memory compression, and errors in different norms.Comment: 25 pages, 41 figure

Block Structured Adaptive Mesh and Time Refinement for Hybrid, Hyperbolic + N-body Systems

We present a new numerical algorithm for the solution of coupled collisional and collisionless systems, based on the block structured adaptive mesh and time refinement strategy (AMR). We describe the issues associated with the discretization of the system equations and the synchronization of the numerical solution on the hierarchy of grid levels. We implement a code based on a higher order, conservative and directionally unsplit Godunov's method for hydrodynamics; a symmetric, time centered modified symplectic scheme for collisionless component; and a multilevel, multigrid relaxation algorithm for the elliptic equation coupling the two components. Numerical results that illustrate the accuracy of the code and the relative merit of various implemented schemes are also presented.Comment: 40 pages, 10 figures, JPC in press. Extended the code test section, new convergence tests, several typos corrected. Full resolution version available at http://www.exp-astro.phys.ethz.ch/miniati/charm.pd

Gravitational Collapse and Fragmentation in Molecular Clouds with Adaptive Mesh Refinement

We describe a powerful methodology for numerical solution of 3-D self-gravitational hydrodynamics problems with extremely high resolution. Our method utilizes the technique of local adaptive mesh refinement (AMR), employing multiple grids at multiple levels of resolution. These grids are automatically and dynamically added and removed as necessary to maintain adequate resolution. This technology allows for the solution of problems in a manner that is both more efficient and more versatile than other fixed and variable resolution methods. The application of AMR to simulate the collapse and fragmentation of a molecular cloud, a key step in star formation, is discussed. Such simulations involve many orders of magnitude of variation in length scale as fragments form. In this paper we briefly describe the methodology and present an illustrative application for nonisothermal cloud collapse. We describe the numerical Jeans condition, a criterion for stability of self-gravitational hydrodynamics problems. We show the first well-resolved nonisothermal evolutionary sequence beginning with a perturbed dense molecular cloud core that leads to the formation of a binary system consisting of protostellar cores surrounded by distinct protostellar disks. The scale of the disks, of order 100 AU, is consistent with observations of gaseous disks surrounding single T-Tauri stars and debris disks surrounding systems such as $\beta$ Pictoris.Comment: 10 pages, 6 figures (color postscript). To appear in the proceedings of Numerical Astrophysics 1998, Tokyo, March 10-13, 199

hp-adaptive discontinuous Galerkin solver for elliptic equations in numerical relativity

A considerable amount of attention has been given to discontinuous Galerkin methods for hyperbolic problems in numerical relativity, showing potential advantages of the methods in dealing with hydrodynamical shocks and other discontinuities. This paper investigates discontinuous Galerkin methods for the solution of elliptic problems in numerical relativity. We present a novel hp-adaptive numerical scheme for curvilinear and non-conforming meshes. It uses a multigrid preconditioner with a Chebyshev or Schwarz smoother to create a very scalable discontinuous Galerkin code on generic domains. The code employs compactification to move the outer boundary near spatial infinity. We explore the properties of the code on some test problems, including one mimicking Neutron stars with phase transitions. We also apply it to construct initial data for two or three black holes

Adjoint-Based Error Estimation and Mesh Adaptation for Hybridized Discontinuous Galerkin Methods

We present a robust and efficient target-based mesh adaptation methodology, building on hybridized discontinuous Galerkin schemes for (nonlinear) convection-diffusion problems, including the compressible Euler and Navier-Stokes equations. Hybridization of finite element discretizations has the main advantage, that the resulting set of algebraic equations has globally coupled degrees of freedom only on the skeleton of the computational mesh. Consequently, solving for these degrees of freedom involves the solution of a potentially much smaller system. This not only reduces storage requirements, but also allows for a faster solution with iterative solvers. The mesh adaptation is driven by an error estimate obtained via a discrete adjoint approach. Furthermore, the computed target functional can be corrected with this error estimate to obtain an even more accurate value. The aim of this paper is twofold: Firstly, to show the superiority of adjoint-based mesh adaptation over uniform and residual-based mesh refinement, and secondly to investigate the efficiency of the global error estimate