Decision Support System for target prostate biopsy outcome prediction: Clustering and FP-growth algorithm for fuzzy rules extraction

An automated and data-driven rules extraction is crucial for the construction of Fuzzy Inference Systems (FIS). This work presents a method for extracting fuzzy rules based on clustering and association mining through the FP-growth algorithm. First, Self Organizing Maps are used to identify subsets of elements with similar characteristics, separately for each class. Then, the FP-Growth algorithm is applied to each cluster. Elements matching each rule are subdivided in the corresponding classes and only rules showing a predominance of elements belonging to one class are used as fuzzy rules. The method was applied to the construction of a Decision Support System based on FIS for the target prostate biopsy outcome prediction based on six pre-bioptic variables. A dataset containing 1447 patients (824 with positive outcome, 623 with negative outcome) was used. Four and six clusters were identified for the positive and the negative class, respectively. A total of 151 rules were extracted with FP-Growth algorithm and 29 were included in the FIS. The system was able to classify 927 patients out of 1447. On the classi-fied subjects, it reached a sensitivity of 87.5% and a specificity of 58.8%

Enhancing Fuzzy Associative Rule Mining Approaches for Improving Prediction Accuracy. Integration of Fuzzy Clustering, Apriori and Multiple Support Approaches to Develop an Associative Classification Rule Base

Building an accurate and reliable model for prediction for different application domains, is one of the most significant challenges in knowledge discovery and data mining. This thesis focuses on building and enhancing a generic predictive model for estimating a future value by extracting association rules (knowledge) from a quantitative database. This model is applied to several data sets obtained from different benchmark problems, and the results are evaluated through extensive experimental tests. The thesis presents an incremental development process for the prediction model with three stages. Firstly, a Knowledge Discovery (KD) model is proposed by integrating Fuzzy C-Means (FCM) with Apriori approach to extract Fuzzy Association Rules (FARs) from a database for building a Knowledge Base (KB) to predict a future value. The KD model has been tested with two road-traffic data sets. Secondly, the initial model has been further developed by including a diversification method in order to improve a reliable FARs to find out the best and representative rules. The resulting Diverse Fuzzy Rule Base (DFRB) maintains high quality and diverse FARs offering a more reliable and generic model. The model uses FCM to transform quantitative data into fuzzy ones, while a Multiple Support Apriori (MSapriori) algorithm is adapted to extract the FARs from fuzzy data. The correlation values for these FARs are calculated, and an efficient orientation for filtering FARs is performed as a post-processing method. The FARs diversity is maintained through the clustering of FARs, based on the concept of the sharing function technique used in multi-objectives optimization. The best and the most diverse FARs are obtained as the DFRB to utilise within the Fuzzy Inference System (FIS) for prediction. The third stage of development proposes a hybrid prediction model called Fuzzy Associative Classification Rule Mining (FACRM) model. This model integrates the ii improved Gustafson-Kessel (G-K) algorithm, the proposed Fuzzy Associative Classification Rules (FACR) algorithm and the proposed diversification method. The improved G-K algorithm transforms quantitative data into fuzzy data, while the FACR generate significant rules (Fuzzy Classification Association Rules (FCARs)) by employing the improved multiple support threshold, associative classification and vertical scanning format approaches. These FCARs are then filtered by calculating the correlation value and the distance between them. The advantage of the proposed FACRM model is to build a generalized prediction model, able to deal with different application domains. The validation of the FACRM model is conducted using different benchmark data sets from the University of California, Irvine (UCI) of machine learning and KEEL (Knowledge Extraction based on Evolutionary Learning) repositories, and the results of the proposed FACRM are also compared with other existing prediction models. The experimental results show that the error rate and generalization performance of the proposed model is better in the majority of data sets with respect to the commonly used models. A new method for feature selection entitled Weighting Feature Selection (WFS) is also proposed. The WFS method aims to improve the performance of FACRM model. The prediction performance is improved by minimizing the prediction error and reducing the number of generated rules. The prediction results of FACRM by employing WFS have been compared with that of FACRM and Stepwise Regression (SR) models for different data sets. The performance analysis and comparative study show that the proposed prediction model provides an effective approach that can be used within a decision support system.Applied Science University (ASU) of Jorda

Mining Linguistic Associations for Emergent Flood Prediction Adjustment

Floods belong to the most hazardous natural disasters and their disaster management heavily relies on precise forecasts. These forecasts are provided by physical models based on differential equations. However, these models do depend on unreliable inputs such as measurements or parameter estimations which causes undesirable inaccuracies. Thus, an appropriate data-mining analysis of the physical model and its precision based on features that determine distinct situations seems to be helpful in adjusting the physical model. An application of fuzzy GUHA method in flood peak prediction is presented. Measured water flow rate data from a system for flood predictions were used in order to mine fuzzy association rules expressed in natural language. The provided data was firstly extended by a generation of artificial variables (features). The resulting variables were later on translated into fuzzy GUHA tables with help of Evaluative Linguistic Expressions in order to mine associations. The found associations were interpreted as fuzzy IF-THEN rules and used jointly with the Perception-based Logical Deduction inference method to predict expected time shift of flow rate peaks forecasted by the given physical model. Results obtained from this adjusted model were statistically evaluated and the improvement in the forecasting accuracy was confirmed

Fuzzy-Granular Based Data Mining for Effective Decision Support in Biomedical Applications

Due to complexity of biomedical problems, adaptive and intelligent knowledge discovery and data mining systems are highly needed to help humans to understand the inherent mechanism of diseases. For biomedical classification problems, typically it is impossible to build a perfect classifier with 100% prediction accuracy. Hence a more realistic target is to build an effective Decision Support System (DSS). In this dissertation, a novel adaptive Fuzzy Association Rules (FARs) mining algorithm, named FARM-DS, is proposed to build such a DSS for binary classification problems in the biomedical domain. Empirical studies show that FARM-DS is competitive to state-of-the-art classifiers in terms of prediction accuracy. More importantly, FARs can provide strong decision support on disease diagnoses due to their easy interpretability. This dissertation also proposes a fuzzy-granular method to select informative and discriminative genes from huge microarray gene expression data. With fuzzy granulation, information loss in the process of gene selection is decreased. As a result, more informative genes for cancer classification are selected and more accurate classifiers can be modeled. Empirical studies show that the proposed method is more accurate than traditional algorithms for cancer classification. And hence we expect that genes being selected can be more helpful for further biological studies

A survey on utilization of data mining approaches for dermatological (skin) diseases prediction

Due to recent technology advances, large volumes of medical data is obtained. These data contain valuable information. Therefore data mining techniques can be used to extract useful patterns. This paper is intended to introduce data mining and its various techniques and a survey of the available literature on medical data mining. We emphasize mainly on the application of data mining on skin diseases. A categorization has been provided based on the different data mining techniques. The utility of the various data mining methodologies is highlighted. Generally association mining is suitable for extracting rules. It has been used especially in cancer diagnosis. Classification is a robust method in medical mining. In this paper, we have summarized the different uses of classification in dermatology. It is one of the most important methods for diagnosis of erythemato-squamous diseases. There are different methods like Neural Networks, Genetic Algorithms and fuzzy classifiaction in this topic. Clustering is a useful method in medical images mining. The purpose of clustering techniques is to find a structure for the given data by finding similarities between data according to data characteristics. Clustering has some applications in dermatology. Besides introducing different mining methods, we have investigated some challenges which exist in mining skin data

Rule Extraction, Fuzzy ARTMAP, and Medical Databases

This paper shows how knowledge, in the form of fuzzy rules, can be derived from a self-organizing supervised learning neural network called fuzzy ARTMAP. Rule extraction proceeds in two stages: pruning removes those recognition nodes whose confidence index falls below a selected threshold; and quantization of continuous learned weights allows the final system state to be translated into a usable set of rules. Simulations on a medical prediction problem, the Pima Indian Diabetes (PID) database, illustrate the method. In the simulations, pruned networks about 1/3 the size of the original actually show improved performance. Quantization yields comprehensible rules with only slight degradation in test set prediction performance.British Petroleum (89-A-1204); Defense Advanced Research Projects Agency (AFOSR-90-0083, ONR-N00014-92-J-4015); National Science Foundation (IRI-90-00530); Office of Naval Research (N00014-91-J-4100); Air Force Office of Scientific Research (90-0083); Institute of Systems Science (National University of Singapore

A fuzzy associative classification approach for recommender systems

Despite the existence of dierent methods, including data mining techniques, available to be used in recommender systems, such systems still contain numerous limitations. They are in a constant need for personalization in order to make effective suggestions and to provide valuable information of items available. A way to reach such personalization is by means of an alternative data mining technique called classification based on association, which uses association rules in a prediction perspective. In this work we propose a hybrid methodology for recommender systems, which uses collaborative altering and content-based approaches in a joint method taking advantage from the strengths of both approaches. Moreover, we also employ fuzzy logic to enhance recommendations quality and eectiveness. In order to analyze the behavior of the techniques used in our methodology, we accomplished a case study using real data gathered from two recommender systems. Results revealed that such techniques can be applied eectively in recommender systems, minimizing the eects of typical drawbacks they present

Personalized Fuzzy Text Search Using Interest Prediction and Word Vectorization

In this paper we study the personalized text search problem. The keyword based search method in conventional algorithms has a low efficiency in understanding users' intention since the semantic meaning, user profile, user interests are not always considered. Firstly, we propose a novel text search algorithm using a inverse filtering mechanism that is very efficient for label based item search. Secondly, we adopt the Bayesian network to implement the user interest prediction for an improved personalized search. According to user input, it searches the related items using keyword information, predicted user interest. Thirdly, the word vectorization is used to discover potential targets according to the semantic meaning. Experimental results show that the proposed search engine has an improved efficiency and accuracy and it can operate on embedded devices with very limited computational resources