5,621 research outputs found
MissForest - nonparametric missing value imputation for mixed-type data
Modern data acquisition based on high-throughput technology is often facing
the problem of missing data. Algorithms commonly used in the analysis of such
large-scale data often depend on a complete set. Missing value imputation
offers a solution to this problem. However, the majority of available
imputation methods are restricted to one type of variable only: continuous or
categorical. For mixed-type data the different types are usually handled
separately. Therefore, these methods ignore possible relations between variable
types. We propose a nonparametric method which can cope with different types of
variables simultaneously. We compare several state of the art methods for the
imputation of missing values. We propose and evaluate an iterative imputation
method (missForest) based on a random forest. By averaging over many unpruned
classification or regression trees random forest intrinsically constitutes a
multiple imputation scheme. Using the built-in out-of-bag error estimates of
random forest we are able to estimate the imputation error without the need of
a test set. Evaluation is performed on multiple data sets coming from a diverse
selection of biological fields with artificially introduced missing values
ranging from 10% to 30%. We show that missForest can successfully handle
missing values, particularly in data sets including different types of
variables. In our comparative study missForest outperforms other methods of
imputation especially in data settings where complex interactions and nonlinear
relations are suspected. The out-of-bag imputation error estimates of
missForest prove to be adequate in all settings. Additionally, missForest
exhibits attractive computational efficiency and can cope with high-dimensional
data.Comment: Submitted to Oxford Journal's Bioinformatics on 3rd of May 201
Classification of Arrhythmia by Using Deep Learning with 2-D ECG Spectral Image Representation
The electrocardiogram (ECG) is one of the most extensively employed signals
used in the diagnosis and prediction of cardiovascular diseases (CVDs). The ECG
signals can capture the heart's rhythmic irregularities, commonly known as
arrhythmias. A careful study of ECG signals is crucial for precise diagnoses of
patients' acute and chronic heart conditions. In this study, we propose a
two-dimensional (2-D) convolutional neural network (CNN) model for the
classification of ECG signals into eight classes; namely, normal beat,
premature ventricular contraction beat, paced beat, right bundle branch block
beat, left bundle branch block beat, atrial premature contraction beat,
ventricular flutter wave beat, and ventricular escape beat. The one-dimensional
ECG time series signals are transformed into 2-D spectrograms through
short-time Fourier transform. The 2-D CNN model consisting of four
convolutional layers and four pooling layers is designed for extracting robust
features from the input spectrograms. Our proposed methodology is evaluated on
a publicly available MIT-BIH arrhythmia dataset. We achieved a state-of-the-art
average classification accuracy of 99.11\%, which is better than those of
recently reported results in classifying similar types of arrhythmias. The
performance is significant in other indices as well, including sensitivity and
specificity, which indicates the success of the proposed method.Comment: 14 pages, 5 figures, accepted for future publication in Remote
Sensing MDPI Journa
Image-Based Cardiac Diagnosis With Machine Learning: A Review
Cardiac imaging plays an important role in the diagnosis of cardiovascular disease (CVD). Until now, its role has been limited to visual and quantitative assessment of cardiac structure and function. However, with the advent of big data and machine learning, new opportunities are emerging to build artificial intelligence tools that will directly assist the clinician in the diagnosis of CVDs. This paper presents a thorough review of recent works in this field and provide the reader with a detailed presentation of the machine learning methods that can be further exploited to enable more automated, precise and early diagnosis of most CVDs
Clinical applications of artificial intelligence in cardiology on the verge of the decade
Artificial intelligence (AI) has been hailed as the fourth industrial revolution and its influence on people’s lives is increasing. The research on AI applications in medicine is progressing rapidly. This revolution shows promise for more precise diagnoses, streamlined workflows, increased accessibility to healthcare services and new insights into ever-growing population-wide datasets. While some applications have already found their way into contemporary patient care, we are still in the early days of the AI-era in medicine. Despite the popularity of these new technologies, many practitioners lack an understanding of AI methods, their benefits, and pitfalls. This review aims to provide information about the general concepts of machine learning (ML) with special focus on the applications of such techniques in cardiovascular medicine. It also sets out the current trends in research related to medical applications of AI. Along with new possibilities, new threats arise — acknowledging and understanding them is as important as understanding the ML methodology itself. Therefore, attention is also paid to the current opinions and guidelines regarding the validation and safety of AI-powered tools
Radiomics in Cardiovascular Disease Imaging: from Pixels to the Heart of the Problem
Purpose of Review
This review of the literature aims to present potential applications of radiomics in cardiovascular radiology and, in particular, in cardiac imaging.
Recent Findings
Radiomics and machine learning represent a technological innovation which may be used to extract and analyze quantitative features from medical images. They aid in detecting hidden pattern in medical data, possibly leading to new insights in pathophysiology of different medical conditions. In the recent literature, radiomics and machine learning have been investigated for numerous potential applications in cardiovascular imaging. They have been proposed to improve image acquisition and reconstruction, for anatomical structure automated segmentation or automated characterization of cardiologic diseases.
Summary
The number of applications for radiomics and machine learning is continuing to rise, even though methodological and implementation issues still limit their use in daily practice. In the long term, they may have a positive impact in patient management
Knowledge discovery on the integrative analysis of electrical and mechanical dyssynchrony to improve cardiac resynchronization therapy
Cardiac resynchronization therapy (CRT) is a standard method of treating heart failure by coordinating the function of the left and right ventricles. However, up to 40% of CRT recipients do not experience clinical symptoms or cardiac function improvements. The main reasons for CRT non-response include: (1) suboptimal patient selection based on electrical dyssynchrony measured by electrocardiogram (ECG) in current guidelines; (2) mechanical dyssynchrony has been shown to be effective but has not been fully explored; and (3) inappropriate placement of the CRT left ventricular (LV) lead in a significant number of patients.
In terms of mechanical dyssynchrony, we utilize an autoencoder to extract new predictive features from nuclear medicine images, characterizing local mechanical dyssynchrony and improving the CRT response rate. Although machine learning can identify complex patterns and make accurate predictions from large datasets, the low interpretability of these black box methods makes it difficult to integrate them with clinical decisions made by physicians in the healthcare setting. Therefore, we use visualization techniques to enable physicians to understand the physical meaning of new features and the reasoning behind the clinical decisions made by the artificial intelligent model.
For electrical dyssynchrony, we use short-time Fourier transform (STFT) to transform one-dimensional waveforms into two-dimensional frequency-time spectra. And transfer learning is used to leverage the knowledge learned from a large arrhythmia ECG dataset of related medical conditions to improve patient selection for CRT with limited data. This improves prediction accuracy, reduces the time and resources required, and potentially leads to better patient outcomes. Furthermore, an innovative approach is proposed for using three-dimensional spatial VCG information to describe the characteristics of electrical dyssynchrony, locate the latest activation site, and combine it with the latest mechanical contraction site to select the optimal LV lead position.
In addition, we apply deep reinforcement learning to the decision-making problem of CRT patients. We investigate discrete state space/specific action space models to find the best treatment strategy, improve the reward equation based on the physician\u27s experience, and learn the approximation of the best action-value function that can improve the treatment policy used by clinicians and provide interpretability
Medical Diagnosis with Multimodal Image Fusion Techniques
Image Fusion is an effective approach utilized to draw out all the significant information from the source images, which supports experts in evaluation and quick decision making. Multi modal medical image fusion produces a composite fused image utilizing various sources to improve quality and extract complementary information. It is extremely challenging to gather every piece of information needed using just one imaging method. Therefore, images obtained from different modalities are fused Additional clinical information can be gleaned through the fusion of several types of medical image pairings. This study's main aim is to present a thorough review of medical image fusion techniques which also covers steps in fusion process, levels of fusion, various imaging modalities with their pros and cons, and the major scientific difficulties encountered in the area of medical image fusion. This paper also summarizes the quality assessments fusion metrics. The various approaches used by image fusion algorithms that are presently available in the literature are classified into four broad categories i) Spatial fusion methods ii) Multiscale Decomposition based methods iii) Neural Network based methods and iv) Fuzzy Logic based methods. the benefits and pitfalls of the existing literature are explored and Future insights are suggested. Moreover, this study is anticipated to create a solid platform for the development of better fusion techniques in medical applications
Semantic bottleneck for computer vision tasks
This paper introduces a novel method for the representation of images that is
semantic by nature, addressing the question of computation intelligibility in
computer vision tasks. More specifically, our proposition is to introduce what
we call a semantic bottleneck in the processing pipeline, which is a crossing
point in which the representation of the image is entirely expressed with
natural language , while retaining the efficiency of numerical representations.
We show that our approach is able to generate semantic representations that
give state-of-the-art results on semantic content-based image retrieval and
also perform very well on image classification tasks. Intelligibility is
evaluated through user centered experiments for failure detection
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