Study of generalized radon transforms and applications in compton scattering tomography

This thesis is concerned with the study of new modalities of Compton scattering tomography which are a relevant alternative with current imaging techniques. Such a study requires powerful mathematical tools. Then I, first, extended the known properties of the classical Radon transform to larger manifolds of curves. In particular, I established the analytical inversion formulas for solving the associated image reconstruction problem. Due to these inversion properties and a numerical study of involved processes, the theoretical feasibility of the proposed modalities in Compton scattering tomography could be established. In a second time, I established an iterative algorithm to correct the attenuation factor in the studied modalities (GIPC). Finally, I proposed the first bimodality based on the scattered radiation. This new system, akin to the SPECT-CT scan, combines two modalities of Compton scattering tomography. The simulation results show the interest of such a future system.Diese Arbeit konzentriert sich auf die Untersuchung neuer Modelle in der Compton - Streutomographie, die eine relevante Alternative oder Ergänzung aktueller bildgebender Verfahren darstellen. Da eine mathematische Untersuchung dafür benötigt ist, habe ich zuerst die Eigenschaften der Radontransformation auf eine größere Familie von Kurven erweitert. Insbesondere habe ich die analytischen Umkehrformeln zur Bildrekonstruktion etabliert. Dank dieser Inversionseigenschaften und der numerischen Untersuchung der beteiligten Prozessen, hat die theoretische Machbarkeit der Compton-Streutomographie Modelle bewiesen. Dann habe ich einen iterativen Algorithmus (GIPC) hergeleitet, um den Dämpfungsfaktor in den Modalitäten zu korrigieren. Schließlich habe ich die erste Bimodalität auf der Grundlage der Streustrahlung aufgestellt. Dieses neue System kombiniert zwei Methoden der Compton-Streutomographie ähnlich des SPECT-CT Bilder. Die Simulationsergebnisse zeigen dass in Zukunft großes Interesse an einen solchen System existiert

Music Syncing as Intermedial Translation

In this article I discuss the notion of intermedial translation in the context of audiovisual works. I begin by presenting Lars Elleström’s modality model as it provides the larger framework under which I then specify the scope of intermedial translation. After confronting different interpretation of the concept, I present my main contribution, which links this theoretical notion to the practice of music synchronization. I argue that the resulting approach provides a unique tool for the analysis of audiovisual artefacts. In order to further clarify this analytical perspective and prove its usefulness, I then proceed to apply it to artifacts created through a variety of software, ranging from music visualizers to video games. A look into 2006 Flash game Line Rider and the online community that spawned around it completes the article as my main case study

Integração da imagem vídeo do paciente nas imagens de medicina nuclear

O movimento é um problema crítico em SPECT e PET, especialmente em sujeitos não cooperantes, tais como pacientes com distúrbios de movimento e crianças jovens. Para evitar este problema os pacientes são frequentemente sedados, ou, quando mais cooperantes, podem ser imobilizados pelos técnicos e retidos por cintos adequados. Mesmo assim, a maior parte das vezes, o movimento tem de ser corrigido após o exame. Os algoritmos de correcção de movimentos actualmente disponíveis apresentam pouca eficácia para estes exames, uma vez que dependem dos próprios dados adquiridos pela câmara gama ou PET. A utilização de elevadas taxas de aquisição necessárias para a efectiva quantificação do movimento encontra-se limitada por considerações de ruído. A solução seria a de separar a codificação dos movimentos dos dados das imagens de medicina nuclear. No presente trabalho desenvolvemos um protótipo de baixo custo baseado num sistema estéreo de câmaras vídeo capaz de medir os movimentos do objecto de estudo e, em seguida, corrigir as imagens adquiridas por uma câmara gama. Simultaneamente, corregistaram-se as imagens de medicina nuclear com as imagens da câmara gama. Os métodos de detecção e de correcção de movimentos foram avaliados por simulação e por análise de dados reais. Os ensaios experimentais foram realizados com um fantoma de Jaszczak que foi movimentado de forma controlada durante a aquisição com a câmara gama. Realizaram-se também ensaios de corregisto entre as imagens nucleares e as de vídeo, utilizando o fantoma de Jaszczak e um fantoma antropomórfico dos núcleos da base. Os resultados obtidos demonstram a validade do método proposto. A implementação desta técnica em ambiente clínico poderá evitar o uso de sedantes, promover um exame mais confortável para os pacientes e reduzir a dose absorvida pelos técnicos. A fusão de imagens contribui para uma localização mais exacta das regiões realçadas nas imagens nucleares

Optimization of the Parameters of the YAP-(S)PETII Scanner for SPECT Acquisition

Abstract Single Photon Emission Computed Tomography (SPECT) could be considered as a milestone in terms of biomedical imaging technique, which visualizes Functional processes in-vivo, based on the emission of gamma rays produced within the body. The most distinctive feature of SPECT from other imaging modalities is that it is based on the tracer principle, discovered by George Charles de Hevesy in the first decade of the twentieth century. As known by everyone, the metabolism of an organism is composed of atoms within a molecule which can be replaced by one of its radioactive isotopes. By using this principle, we are able to follow and detect pathways of the photons which are emitted from the radioactive element inside the metabolism. SPECT produces images by using a gamma camera which consists of two major functional components, the collimator and the radiation detector. The collimator is a thick sheet of a heavy metal like lead, tungsten of gold with densely packed small holes and is put just in front of the photon detector. The radiation detector converts the gamma rays into scintillation light photons. In conventional SPECT, scanners utilize a parallel hole collimator. Defining a small solid angle, each collimator hole is located somewhere along this line and the photons might reach the detector by passing through these holes. Subsequently, we can create projection images of the radioisotope distribution. The quantity of photons which come to the radiation detector through the collimator holes specifies the image quality regarding signal to noise ratio. One of the crucial parts of all SPECT scanners is the collimator design. The main part of this dissertation is to investigate performance characteristics of YAP-(S)PETII scanner collimator and to obtain collimator characteristics curves for optimization purposes. Before starting the collimator performance investigation of YAP-(S)PETII scanner, we first performed simulation of it in SPECT mode with point source Tc-99m to measure collimator and system efficiency by using GATE–the Geant4 Application for Emission Tomography. GATE is an advanced, flexible, precise, opensource Monte Carlo toolkit developed by the international OpenGATE collaboration and dedicated to the numerical simulations in medical imaging. We obtained the results of collimator and system efficiency in terms of collimator length, radius and septa by using GATE_v4. Then, we compared our results with analytical formulation of efficiency and resolution. For those simulation experiments, we found that the difference between the simulated and the analytical results with regard to approximated geometrical collimator efficiency formulation of H. Anger, is within 20%. Then, we wrote a new ASCII sorter algorithm, which reads ASCII output of GATE_v4 and then creates a sinogram and reconstructs it to see the final simulation results. At the beginning, we used the analytical reconstruction method, filtered back projection (FBP), but this method produces severely blurred images. To solve this problem and increase our image quality, we tried different mathematical filters, like ramp, sheep-logan, low-pass cosine filters. After all of those studies mentioned above, we learned that GATE_v4 is not practical to measure collimator efficiency and resolution. On the other hand, the results of GATE_v4 did not show directly septal penetrated photon ratio. Under the light of these findings, we decided to develop a new user-friendly ray tracing program for optimization of low energy general purpose (LEGP) parallelhole collimators. In addition, we tried to evaluate the image quality and quantify the impact of high-energy contamination for I-123 isotope imaging. Due to its promising chemical characteristics, Iodine-123 is increasingly used in SPECT studies. 159 keV photons are used for imaging, however, high-energy photons result in an error in the projection data primarily by penetration of the collimator and scattering inside the crystal with energy close to the photons used for imaging. One of the way to minimize this effect is using a double energy window (DEW) method, because, it decreases noise in main (sensitive) energy window. By using this method, we tried to determine the difference between simulated and experimental projection results and scattered photon ratio (Sk) value of YAP-(S)PETII scanner for I-123 measurements. The main drawback of GATE simulations is that they are CPU-intensive. In this dissertation to handle this problem, we did the feasibility study of the Fully Monte Carlo based implementation of the system matrix derivation of YAP-(S)PETII scanner by using XtreemOS platform. To manage lifecycle of the simulation on the top XtreemOS, we developed a set of scripts. The main purpose of our study is to integrate a distributed platform like XtreemOS to reduce the overall simulation completion time and increase the feasibility of SPECT simulations in a research environment and establish an accurate and fast method for deriving the system matrix of the YAP-(S)PETII scanner by using Monte Carlo simulation approach. We developed also the ML-EM Algorithm to the reconstruct our GATE simulation results and to derive the system matrix directly from GATE output. In addition to the accuracy consideration, we intend to develop a flexible matrix derivation method and GATE output reconstruction tool

A reconstrução tomográfica em SPECT com utilização dos novos métodos iterativos “WBR”: comparação com métodos analíticos

Os métodos utilizados pela Medicina moderna no âmbito da Imagem Molecular e na sua capacidade de diagnosticar a partir da “Função do Orgão” em vez da “Morfologia do Orgão”, vieram trazer á componente fundamental desta modalidade da Imagiologia Médica – A Medicina Nuclear – uma importância acrescida, que se tem traduzido num aumento significativo no recurso á sua utilização nas diferentes formas das suas aplicações clínicas. Para além dos aspectos meramente clínicos, que só por si seriam suficientes para ocupar várias dissertações como a presente; a própria natureza desta técnica de imagem, com a sua inerente baixa resolução e tempos longos de aquisição, vieram trazer preocupações acrescidas quanto ás questões relacionadas com a produtividade (nº de estudos a realizar por unidade de tempo); com a qualidade (aumento da resolução da imagem obtida) e, com os níveis de actividade radioactiva injectada nos pacientes (dose de radiação efectiva sobre as populações). Conhecidas que são então as limitações tecnológicas associadas ao desenho dos equipamentos destinados á aquisição de dados em Medicina Nuclear, que apesar dos avanços introduzidos, mantêm mais ou menos inalteráveis os conceitos base de funcionamento de uma Câmara Gama, imaginou-se a alteração significativa dos parâmetros de aquisição (tempo, resolução, actividade), actuando não ao nível das condições técnico-mecânicas dessa aquisição, mas essencialmente ao nível do pós-processamento dos dados adquiridos segundo os métodos tradicionais e que ainda constituem o estado da arte desta modalidade. Este trabalho tem então como objectivo explicar por um lado, com algum pormenor, as bases tecnológicas que desde sempre têm suportado o funcionamento dos sistemas destinados á realização de exames de Medicina Nuclear, mas sobretudo, apresentar as diferenças com os inovadores métodos, que aplicando essencialmente conhecimento (software), permitiram responder ás questões acima levantadas.The Molecular Imaging methods currently used in modern Medicine, and their capacity of making a diagnostic from “Organ Function” instead of “Organ Morphology”, are bringing to this fundamental modality of Medical Imaging – Nuclear Medicine – a new role, translated into a significant increase on its usage trough the several forms of his clinical applications. In addition to the purely clinical aspects, that alone would be suficient to occupy several dissertations as this; the very nature of this imaging technique, with its inherent low resolution and long acquisition times, has bring increased concerns with regard to issues related to productivity (number of studies to be carried out by unit of time), to quality (increase of image resolution) and, with the injected radioactive activity levels in patients (effective radiation dose on population). Knowing the technological limitations associated with the design of equipment for data acquisition in Nuclear Medicine, that, despite advances made, remain more or less unchanged for the basic concepts of operation of a Gamma Camera, we planned a significant change on the acquisition parameters (time, resolution, activity), acting not at the level of technical and mechanical conditions of acquisition, but essentially at the post-processing level of the acquired data. The present work aims to explain on one hand, with some detail, the technological basis which have always supported the functioning of the systems designed to perform Nuclear Medicine exams, but on the other hand, to present differences in regard to the innovative methods, which essentially answer the above questions

Gamma-ray imaging detector for small animal research

A novel radiation imaging technology for in vivo molecular imaging in small mammals is described. The goal of this project is to develop a new type of imaging detector system suitable for real-time in vivo probe imaging studies in small animals. This technology takes advantage of the gamma-ray and x-ray emission properties of the radioisotope iodine 125 (125I) which is employed as the label for molecular probes. The radioisotope 125I is a gamma-ray emitting radioisotope that can be commercially obtained already attached to biomedically interesting molecules to be used as tracers for biomedical and molecular biology research.;The isotope 125I decays via electron capture consequently emitting a 35 keV gamma-ray followed by the near coincident emission of several 27--32 keV Kalpha and Kbeta shell x-rays. Because of these phenomena, a coincidence condition can be set to detect 125I thus enabling the reduction of any background radiation that could contaminate the image. The detector system is based on an array of CsI(Na) crystal scintillators coupled to a 125 mm diameter position sensitive photomultiplier tube. An additional standard 125 mm diameter photomultiplier tube coupled to a NaI(Tl) scintillator acts as the coincident detector. to achieve high resolution images the detector system utilizes a custom-built copper laminate high resolution collimator. The 125I detector system can achieve a spatial resolution of less than 2 mm FWHM for an object at a distance of 1.5 cm from the collimator. The measured total detector sensitivity while using the copper collimator was 68 cpm/muCi.;Results of in vivo mouse imaging studies of the biodistribution of iodine, melatonin, and a neurotransmitter analog (RTI-55) are presented. Many studies in molecular biology deal with following the expression and regulation of a gene at different stages of an organism\u27s development or under different physiological conditions. This detector system makes it possible for laboratories without access to standard nuclear medicine radiopharmaceuticals to perform in vivo imaging research on small a mammals using a whole range of 125I labeled markers that are obtainable from commercial sources

Sistema PET-COMPTON en imagen biomédica

Tesis doctoral inédita. Universidad Autónoma de Madrid, Facultad de Ciencias, Departamento de . Fecha de lectura: 30-06-0

Application of novel technologies for the development of next generation MR compatible PET inserts

Multimodal imaging integrating Positron Emission Tomography and Magnetic Resonance Imaging (PET/MRI) has professed advantages as compared to other available combinations, allowing both functional and structural information to be acquired with very high precision and repeatability. However, it has yet to be adopted as the standard for experimental and clinical applications, due to a variety of reasons mainly related to system cost and flexibility. A hopeful existing approach of silicon photodetector-based MR compatible PET inserts comprised by very thin PET devices that can be inserted in the MRI bore, has been pioneered, without disrupting the market as expected. Technological solutions that exist and can make this type of inserts lighter, cost-effective and more adaptable to the application need to be researched further. In this context, we expand the study of sub-surface laser engraving (SSLE) for scintillators used for PET. Through acquiring, measuring and calibrating the use of a SSLE setting we study the effect of different engraving configurations on detection characteristics of the scintillation light by the photosensors. We demonstrate that apart from cost-effectiveness and ease of application, SSLE treated scintillators have similar spatial resolution and superior sensitivity and packing fraction as compared to standard pixelated arrays, allowing for shorter crystals to be used. Flexibility of design is benchmarked and adoption of honeycomb architecture due to geometrical advantages is proposed. Furthermore, a variety of depth-of-interaction (DoI) designs are engraved and studied, greatly enhancing applicability in small field-of-view tomographs, such as the intended inserts. To adapt to this need, a novel approach for multi-layer DoI characterization has been developed and is demonstrated. Apart from crystal treatment, considerations on signal transmission and processing are addressed. A double time-over-threshold (ToT) method is proposed, using the statistics of noise in order to enhance precision. This method is tested and linearity results demonstrate applicability for multiplexed readout designs. A study on analog optical wireless communication (aOWC) techniques is also performed and proof of concept results presented. Finally, a ToT readout firmware architecture, intended for low-cost FPGAs, has been developed and is described. By addressing the potential development, applicability and merits of a range of transdisciplinary solutions, we demonstrate that with these techniques it is possible to construct lighter, smaller, lower consumption, cost-effective MRI compatible PET inserts. Those designs can make PET/MRI multimodality the dominant clinical and experimental imaging approach, enhancing researcher and physician insight to the mysteries of life.La combinación multimodal de Tomografía por Emisión de Positrones con la Imagen de Resonancia Magnética (PET/MRI, de sus siglas en inglés) tiene clara ventajas en comparación con otras técnicas multimodales actualmente disponibles, dada su capacidad para registrar información funcional e información estructural con mucha precisión y repetibilidad. Sin embargo, esta técnica no acaba de penetrar en la práctica clínica debido en gran parte a alto coste. Las investigaciones que persiguen mejorar el desarrollo de insertos de PET basados en fotodetectores de silicio y compatibles con MRI, aunque han sido intensas y han generado soluciones ingeniosas, todavía no han conseguido encontrar las soluciones que necesita la industria. Sin embargo, existen opciones todavía sin explorar que podrían ayudar a evolucionar este tipo de insertos consiguiendo dispositivos más ligeros, baratos y con mejores prestaciones. Esta tesis profundiza en el estudio de grabación sub-superficie con láser (SSLE) para el diseño de los cristales centelladores usados en los sistemas PET. Para ello hemos caracterizado, medido y calibrado un procedimiento SSLE, y a continuación hemos estudiado el efecto que tienen sobre las especificaciones del detector las diferentes configuraciones del grabado. Demostramos que además de la rentabilidad y facilidad de uso de esta técnica, los centelladores SSLE tienen resolución espacial equivalente y sensibilidad y fracción de empaquetamiento superiores a las matrices de centelleo convencionales, lo que posibilita utilizar cristales más cortos para conseguir la misma sensibilidad. Estos diseños también permiten medir la profundidad de la interacción (DoI), lo que facilita el uso de estos diseños en tomógrafos de radio pequeño, como pueden ser los sistemas preclínicos, los dedicados (cabeza o mama) o los insertos para MRI. Además de trabajar en el tratamiento de cristal de centelleo, hemos considerado nuevas aproximaciones al procesamiento y transmisión de la señal. Proponemos un método innovador de doble medida de tiempo sobre el umbral (ToT) que integra una evaluación de la estadística del ruido con el propósito de mejorar la precisión. El método se ha validado y los resultados demuestran su viabilidad de uso incluso en conjuntos de señales multiplexadas. Un estudio de las técnicas de comunicación óptica analógica e inalámbrica (aOWC) ha permitido el desarrollo de una nueva propuesta para comunicar las señales del detector PET insertado en el gantry a un el procesador de señal externo, técnica que se ha validado en un demostrador. Finalmente, se ha propuesto y demostrado una nueva arquitectura de análisis de señal ToT implementada en firmware en FPGAs de bajo coste. La concepción y desarrollo de estas ideas, así como la evaluación de los méritos de las diferentes soluciones propuestas, demuestran que con estas técnicas es posible construir insertos de PET compatibles con sistemas MRI, que serán más ligeros y compactos, con un reducido consumo y menor coste. De esta forma se contribuye a que la técnica multimodal PET/MRI pueda penetrar en la clínica, mejorando la comprensión que médicos e investigadores puedan alcanzar en su estudio de los misterios de la vida.Programa Oficial de Doctorado en Ingeniería Eléctrica, Electrónica y AutomáticaPresidente: Andrés Santos Lleó.- Secretario: Luis Hernández Corporales.- Vocal: Giancarlo Sportell

Technical Design Report EuroGammaS proposal for the ELI-NP Gamma beam System

The machine described in this document is an advanced Source of up to 20 MeV Gamma Rays based on Compton back-scattering, i.e. collision of an intense high power laser beam and a high brightness electron beam with maximum kinetic energy of about 720 MeV. Fully equipped with collimation and characterization systems, in order to generate, form and fully measure the physical characteristics of the produced Gamma Ray beam. The quality, i.e. phase space density, of the two colliding beams will be such that the emitted Gamma ray beam is characterized by energy tunability, spectral density, bandwidth, polarization, divergence and brilliance compatible with the requested performances of the ELI-NP user facility, to be built in Romania as the Nuclear Physics oriented Pillar of the European Extreme Light Infrastructure. This document illustrates the Technical Design finally produced by the EuroGammaS Collaboration, after a thorough investigation of the machine expected performances within the constraints imposed by the ELI-NP tender for the Gamma Beam System (ELI-NP-GBS), in terms of available budget, deadlines for machine completion and performance achievement, compatibility with lay-out and characteristics of the planned civil engineering