Network Training for Continuous Speech Recognition

Spoken language processing is one of the oldest and most natural modes of information exchange between humans beings. For centuries, people have tried to develop machines that can understand and produce speech the way humans do so naturally. The biggest problem in our inability to model speech with computer programs and mathematics results from the fact that language is instinctive, whereas, the vocabulary and dialect used in communication are learned. Human beings are genetically equipped with the ability to learn languages, and culture imprints the vocabulary and dialect on each member of society. This thesis examines the role of pattern classification in the recognition of human speech, i.e., machine learning techniques that are currently being applied to the spoken language processing problem. The primary objective of this thesis is to create a network training paradigm that allows for direct training of multi-path models and alleviates the need for complicated systems and training recipes. A traditional trainer uses an expectation maximization (EM)based supervised training framework to estimate the parameters of a spoken language processing system. EM-based parameter estimation for speech recognition is performed using several complicated stages of iterative reestimation. These stages typically are prone to human error. The network training paradigm reduces the complexity of the training process while retaining the robustness of the EM-based supervised training framework. The hypothesis of this thesis is that the network training paradigm can achieve comparable recognition performance to a traditional trainer while alleviating the need for complicated systems and training recipes for spoken language processing systems

Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign

<p>Abstract</p> <p>Background</p> <p>Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this problem, however, are forced to employ constraints that reduce computation by restricting the alignments and/or structures (i.e. folds) that are permissible. In this paper, a new methodology is presented for the purpose of establishing alignment constraints based on nucleotide alignment and insertion posterior probabilities. Using a hidden Markov model, posterior probabilities of alignment and insertion are computed for all possible pairings of nucleotide positions from the two sequences. These alignment and insertion posterior probabilities are additively combined to obtain probabilities of <it>co-incidence </it>for nucleotide position pairs. A suitable alignment constraint is obtained by thresholding the co-incidence probabilities. The constraint is integrated with Dynalign, a free energy minimization algorithm for joint alignment and secondary structure prediction. The resulting method is benchmarked against the previous version of Dynalign and against other programs for pairwise RNA structure prediction.</p> <p>Results</p> <p>The proposed technique eliminates manual parameter selection in Dynalign and provides significant computational time savings in comparison to prior constraints in Dynalign while simultaneously providing a small improvement in the structural prediction accuracy. Savings are also realized in memory. In experiments over a 5S RNA dataset with average sequence length of approximately 120 nucleotides, the method reduces computation by a factor of 2. The method performs favorably in comparison to other programs for pairwise RNA structure prediction: yielding better accuracy, on average, and requiring significantly lesser computational resources.</p> <p>Conclusion</p> <p>Probabilistic analysis can be utilized in order to automate the determination of alignment constraints for pairwise RNA structure prediction methods in a principled fashion. These constraints can reduce the computational and memory requirements of these methods while maintaining or improving their accuracy of structural prediction. This extends the practical reach of these methods to longer length sequences. The revised Dynalign code is freely available for download.</p

Logical Hidden Markov Models

Logical hidden Markov models (LOHMMs) upgrade traditional hidden Markov models to deal with sequences of structured symbols in the form of logical atoms, rather than flat characters. This note formally introduces LOHMMs and presents solutions to the three central inference problems for LOHMMs: evaluation, most likely hidden state sequence and parameter estimation. The resulting representation and algorithms are experimentally evaluated on problems from the domain of bioinformatics

Disambiguoiva morfologinen jäsennys probabilistisilla sekvenssimalleilla

A morphological tagger is a computer program that provides complete morphological descriptions of sentences. Morphological taggers find applications in many NLP fields. For example, they can be used as a pre-processing step for syntactic parsers, in information retrieval and machine translation. The task of morphological tagging is closely related to POS tagging but morphological taggers provide more fine-grained morphological information than POS taggers. Therefore, they are often applied to morphologically complex languages, which extensively utilize inflection, derivation and compounding for encoding structural and semantic information. This thesis presents work on data-driven morphological tagging for Finnish and other morphologically complex languages. There exists a very limited amount of previous work on data-driven morphological tagging for Finnish because of the lack of freely available manually prepared morphologically tagged corpora. The work presented in this thesis is made possible by the recently published Finnish dependency treebanks FinnTreeBank and Turku Dependency Treebank. Additionally, the Finnish open-source morphological analyzer OMorFi is extensively utilized in the experiments presented in the thesis. The thesis presents methods for improving tagging accuracy, estimation speed and tagging speed in presence of large structured morphological label sets that are typical for morphologically complex languages. More specifically, it presents a novel formulation of generative morphological taggers using weighted finite-state machines and applies finite-state taggers to context sensitive spelling correction of Finnish. The thesis also explores discriminative morphological tagging. It presents structured sub-label dependencies that can be used for improving tagging accuracy. Additionally, the thesis presents a cascaded variant of the averaged perceptron tagger. In presence of large label sets, a cascaded design results in substantial reduction of estimation speed compared to a standard perceptron tagger. Moreover, the thesis explores pruning strategies for perceptron taggers. Finally, the thesis presents the FinnPos toolkit for morphological tagging. FinnPos is an open-source state-of-the-art averaged perceptron tagger implemented by the author.Disambiguoiva morfologinen jäsennin on ohjelma, joka tuottaa yksikäsitteisiä morfologisia kuvauksia virkkeen sanoille. Tällaisia jäsentimiä voidaan hyödyntää monilla kielenkäsittelyn osa-alueilla, esimerkiksi syntaktisen jäsentimen tai konekäännösjärjestelmän esikäsittelyvaiheena. Kieliteknologisena tehtävänä disambiguoiva morfologinen jäsennys muistuttaa perinteistä sanaluokkajäsennystä, mutta se tuottaa hienojakoisempaa morfologista informaatiota kuin perinteinen sanaluokkajäsennin. Tämän takia disambiguoivia morfologisia jäsentimiä hyödynnetäänkin pääsääntöisesti morfologisesti monimutkaisten kielten, kuten suomen kielen, kieliteknologiassa. Tällaisissa kielissä käytetään paljon sananmuodostuskeinoja kuten taivutusta, johtamista ja yhdyssananmuodostusta. Väitöskirjan esittelemä tutkimus liittyy morfologisesti rikkaiden kielten disambiguoivaan morfologiseen jäsentämiseen koneoppimismenetelmin. Vaikka suomen disambiguoivaa morfologista jäsentämistä on tutkittu aiemmin (esim. Constraint Grammar -formalismin avulla), koneoppimismenetelmiä ei ole aiemmin juurikaan sovellettu. Tämä johtuu siitä että jäsentimen oppimiseen tarvittavia korkealuokkaisia morfologisesti annotoituja korpuksia ei ole ollut avoimesti saatavilla. Tässä väitöskirjassa esitelty tutkimus hyödyntää vastikään julkaistuja suomen kielen dependenssijäsennettyjä FinnTreeBank ja Turku Dependency Treebank korpuksia. Lisäksi tutkimus hyödyntää suomen kielen avointa morfologista OMorFi-jäsennintä. Väitöskirja esittelee menetelmiä jäsennystarkkuuden parantamiseen ja jäsentimen opetusnopeuden sekä jäsennysnopeuden kasvattamiseen. Väitöskirja esittää uuden tavan rakentaa generatiivisia jäsentimiä hyödyntäen painollisia äärellistilaisia koneita ja soveltaa tällaisia jäsentimiä suomen kielen kontekstisensitiiviseen oikeinkirjoituksentarkistukseen. Lisäksi väitöskirja käsittelee diskriminatiivisia jäsennysmalleja. Se esittelee tapoja hyödyntää morfologisten analyysien osia jäsennystarkkuuden parantamiseen. Lisäksi se esittää kaskadimallin, jonka avulla jäsentimen opetusaika lyhenee huomattavasi. Väitöskirja esittää myös tapoja jäsenninmallien pienentämiseen. Lopuksi esitellään FinnPos, joka on kirjoittaman toteuttama avoimen lähdekoodin työkalu disambiguoivien morfologisten jäsentimien opettamiseen

Finding acronyms and their definitions using HMM

In this thesis, we report on design and implementation of a Hidden Markov Model (HMM) to extract acronyms and their expansions. We also report on the training of this HMM with Maximum Likelihood Estimation (MLE) algorithm using a set of examples. Finally, we report on our testing using standard recall and precision. The HMM achieves a recall and precision of 98% and 92% respectively

Hidden Markov Models

Hidden Markov Models (HMMs), although known for decades, have made a big career nowadays and are still in state of development. This book presents theoretical issues and a variety of HMMs applications in speech recognition and synthesis, medicine, neurosciences, computational biology, bioinformatics, seismology, environment protection and engineering. I hope that the reader will find this book useful and helpful for their own research

Representing Conversations for Scalable Overhearing

Open distributed multi-agent systems are gaining interest in the academic community and in industry. In such open settings, agents are often coordinated using standardized agent conversation protocols. The representation of such protocols (for analysis, validation, monitoring, etc) is an important aspect of multi-agent applications. Recently, Petri nets have been shown to be an interesting approach to such representation, and radically different approaches using Petri nets have been proposed. However, their relative strengths and weaknesses have not been examined. Moreover, their scalability and suitability for different tasks have not been addressed. This paper addresses both these challenges. First, we analyze existing Petri net representations in terms of their scalability and appropriateness for overhearing, an important task in monitoring open multi-agent systems. Then, building on the insights gained, we introduce a novel representation using Colored Petri nets that explicitly represent legal joint conversation states and messages. This representation approach offers significant improvements in scalability and is particularly suitable for overhearing. Furthermore, we show that this new representation offers a comprehensive coverage of all conversation features of FIPA conversation standards. We also present a procedure for transforming AUML conversation protocol diagrams (a standard human-readable representation), to our Colored Petri net representation

Connectionist learning of regular graph grammars

This paper presents a new connectionist approach to grammatical inference. Using only positive examples, the algorithm learns regular graph grammars, representing two-dimensional iterative structures drawn on a discrete Cartesian grid. This work is intended as a case study in connectionist symbol processing andgeometric concept formation. A grammar is represented by a self-configuring connectionist network that is analogous to a transition diagram except that it can deal with graph grammars as easily as string grammars. Learning starts with a trivial grammar, expressing nogrammatical knowledge, which is then refined, by a process of successive node splitting and merging, into a grammar adequate to describe the population of input patterns. In conclusion, I argue that the connectionist style of computation is, in some ways, better suited than sequential computation to the task of representing and manipulating recursive structures