Performance Evaluation of Software using Formal Methods

Formal Methods (FMs) can be used in varied areas of applications and to solve critical and fundamental problems of Performance Evaluation (PE). Modelling and analysis techniques can be used for both system and software performance evaluation. The functional features and performance properties of modern software used for performance evaluation has become so intertwined. Traditional models and methods for performance evaluation has been studied widely which culminated into the modern models and methods for system and software engineering evaluation such as formal methods. Techniques have transcended from functionality to performance modeling and analysis. Formal models help in identifying faulty reasoning far earlier than in traditional design; and formal specification has proved useful even on already existing software and systems. Formal approach eliminates ambiguity. The basic and final goal of the performance evaluation technique is to come to a conclusion, whether the software and system are working in a good condition or satisfactorily

Bisimulation of Labeled State-to-Function Transition Systems of Stochastic Process Languages

Labeled state-to-function transition systems, FuTS for short, admit multiple transition schemes from states to functions of finite support over general semirings. As such they constitute a convenient modeling instrument to deal with stochastic process languages. In this paper, the notion of bisimulation induced by a FuTS is proposed and a correspondence result is proven stating that FuTS-bisimulation coincides with the behavioral equivalence of the associated functor. As generic examples, the concrete existing equivalences for the core of the process algebras ACP, PEPA and IMC are related to the bisimulation of specific FuTS, providing via the correspondence result coalgebraic justification of the equivalences of these calculi.Comment: In Proceedings ACCAT 2012, arXiv:1208.430

Forward and Backward Bisimulations for Chemical Reaction Networks

We present two quantitative behavioral equivalences over species of a chemical reaction network (CRN) with semantics based on ordinary differential equations. Forward CRN bisimulation identifies a partition where each equivalence class represents the exact sum of the concentrations of the species belonging to that class. Backward CRN bisimulation relates species that have the identical solutions at all time points when starting from the same initial conditions. Both notions can be checked using only CRN syntactical information, i.e., by inspection of the set of reactions. We provide a unified algorithm that computes the coarsest refinement up to our bisimulations in polynomial time. Further, we give algorithms to compute quotient CRNs induced by a bisimulation. As an application, we find significant reductions in a number of models of biological processes from the literature. In two cases we allow the analysis of benchmark models which would be otherwise intractable due to their memory requirements.Comment: Extended version of the CONCUR 2015 pape

Algebra, coalgebra, and minimization in polynomial differential equations

We consider reasoning and minimization in systems of polynomial ordinary differential equations (ode's). The ring of multivariate polynomials is employed as a syntax for denoting system behaviours. We endow this set with a transition system structure based on the concept of Lie-derivative, thus inducing a notion of L-bisimulation. We prove that two states (variables) are L-bisimilar if and only if they correspond to the same solution in the ode's system. We then characterize L-bisimilarity algebraically, in terms of certain ideals in the polynomial ring that are invariant under Lie-derivation. This characterization allows us to develop a complete algorithm, based on building an ascending chain of ideals, for computing the largest L-bisimulation containing all valid identities that are instances of a user-specified template. A specific largest L-bisimulation can be used to build a reduced system of ode's, equivalent to the original one, but minimal among all those obtainable by linear aggregation of the original equations. A computationally less demanding approximate reduction and linearization technique is also proposed.Comment: 27 pages, extended and revised version of FOSSACS 2017 pape

Bisimulation of Labelled State-to-Function Transition Systems Coalgebraically

Labeled state-to-function transition systems, FuTS for short, are characterized by transitions which relate states to functions of states over general semirings, equipped with a rich set of higher-order operators. As such, FuTS constitute a convenient modeling instrument to deal with process languages and their quantitative extensions in particular. In this paper, the notion of bisimulation induced by a FuTS is addressed from a coalgebraic point of view. A correspondence result is established stating that FuTS-bisimilarity coincides with behavioural equivalence of the associated functor. As generic examples, the equivalences underlying substantial fragments of major examples of quantitative process algebras are related to the bisimilarity of specific FuTS. The examples range from a stochastic process language, PEPA, to a language for Interactive Markov Chains, IML, a (discrete) timed process language, TPC, and a language for Markov Automata, MAL. The equivalences underlying these languages are related to the bisimilarity of their specific FuTS. By the correspondence result coalgebraic justification of the equivalences of these calculi is obtained. The specific selection of languages, besides covering a large variety of process interaction models and modelling choices involving quantities, allows us to show different classes of FuTS, namely so-called simple FuTS, combined FuTS, nested FuTS, and general FuTS

Symbolic Computation of Differential Equivalences

Ordinary differential equations (ODEs) are widespread in manynatural sciences including chemistry, ecology, and systems biology,and in disciplines such as control theory and electrical engineering. Building on the celebrated molecules-as-processes paradigm, they have become increasingly popular in computer science, with high-level languages and formal methods such as Petri nets, process algebra, and rule-based systems that are interpreted as ODEs. We consider the problem of comparing and minimizing ODEs automatically. Influenced by traditional approaches in the theory of programming, we propose differential equivalence relations. We study them for a basic intermediate language, for which we have decidability results, that can be targeted by a class of high-level specifications. An ODE implicitly represents an uncountable state space, hence reasoning techniques cannot be borrowed from established domains such as probabilistic programs with finite-state Markov chain semantics. We provide novel symbolic procedures to check an equivalence and compute the largest one via partition refinement algorithms that use satisfiability modulo theories. We illustrate the generality of our framework by showing that differential equivalences include (i) well-known notions for the minimization of continuous-time Markov chains (lumpability),(ii) bisimulations for chemical reaction networks recently proposedby Cardelli et al., and (iii) behavioral relations for process algebra with ODE semantics. With a prototype implementation we are able to detect equivalences in biochemical models from the literature thatcannot be reduced using competing automatic techniques

Bridging Causal Reversibility and Time Reversibility: A Stochastic Process Algebraic Approach

Causal reversibility blends reversibility and causality for concurrent systems. It indicates that an action can be undone provided that all of its consequences have been undone already, thus making it possible to bring the system back to a past consistent state. Time reversibility is instead considered in the field of stochastic processes, mostly for efficient analysis purposes. A performance model based on a continuous-time Markov chain is time reversible if its stochastic behavior remains the same when the direction of time is reversed. We bridge these two theories of reversibility by showing the conditions under which causal reversibility and time reversibility are both ensured by construction. This is done in the setting of a stochastic process calculus, which is then equipped with a variant of stochastic bisimilarity accounting for both forward and backward directions

Bridging Causal Reversibility and Time Reversibility: A Stochastic Process Algebraic Approach

Causal reversibility blends reversibility and causality for concurrent systems. It indicates that an action can be undone provided that all of its consequences have been undone already, thus making it possible to bring the system back to a past consistent state. Time reversibility is instead considered in the field of stochastic processes, mostly for efficient analysis purposes. A performance model based on a continuous-time Markov chain is time reversible if its stochastic behavior remains the same when the direction of time is reversed. We bridge these two theories of reversibility by showing the conditions under which causal reversibility and time reversibility are both ensured by construction. This is done in the setting of a stochastic process calculus, which is then equipped with a variant of stochastic bisimilarity accounting for both forward and backward directions