2,653 research outputs found
Deep learning cardiac motion analysis for human survival prediction
Motion analysis is used in computer vision to understand the behaviour of
moving objects in sequences of images. Optimising the interpretation of dynamic
biological systems requires accurate and precise motion tracking as well as
efficient representations of high-dimensional motion trajectories so that these
can be used for prediction tasks. Here we use image sequences of the heart,
acquired using cardiac magnetic resonance imaging, to create time-resolved
three-dimensional segmentations using a fully convolutional network trained on
anatomical shape priors. This dense motion model formed the input to a
supervised denoising autoencoder (4Dsurvival), which is a hybrid network
consisting of an autoencoder that learns a task-specific latent code
representation trained on observed outcome data, yielding a latent
representation optimised for survival prediction. To handle right-censored
survival outcomes, our network used a Cox partial likelihood loss function. In
a study of 302 patients the predictive accuracy (quantified by Harrell's
C-index) was significantly higher (p < .0001) for our model C=0.73 (95 CI:
0.68 - 0.78) than the human benchmark of C=0.59 (95 CI: 0.53 - 0.65). This
work demonstrates how a complex computer vision task using high-dimensional
medical image data can efficiently predict human survival
A Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction
The acquisition of Magnetic Resonance Imaging (MRI) is inherently slow.
Inspired by recent advances in deep learning, we propose a framework for
reconstructing MR images from undersampled data using a deep cascade of
convolutional neural networks to accelerate the data acquisition process. We
show that for Cartesian undersampling of 2D cardiac MR images, the proposed
method outperforms the state-of-the-art compressed sensing approaches, such as
dictionary learning-based MRI (DLMRI) reconstruction, in terms of
reconstruction error, perceptual quality and reconstruction speed for both
3-fold and 6-fold undersampling. Compared to DLMRI, the error produced by the
method proposed is approximately twice as small, allowing to preserve
anatomical structures more faithfully. Using our method, each image can be
reconstructed in 23 ms, which is fast enough to enable real-time applications
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Deep learning for cardiac image segmentation: A review
Deep learning has become the most widely used approach for cardiac image segmentation in recent years. In this paper, we provide a review of over 100 cardiac image segmentation papers using deep learning, which covers common imaging modalities including magnetic resonance imaging (MRI), computed tomography (CT), and ultrasound (US) and major anatomical structures of interest (ventricles, atria and vessels). In addition, a summary of publicly available cardiac image datasets and code repositories are included to provide a base for encouraging reproducible research. Finally, we discuss the challenges and limitations with current deep learning-based approaches (scarcity of labels, model generalizability across different domains, interpretability) and suggest potential directions for future research
-Metric: An N-Dimensional Information-Theoretic Framework for Groupwise Registration and Deep Combined Computing
This paper presents a generic probabilistic framework for estimating the
statistical dependency and finding the anatomical correspondences among an
arbitrary number of medical images. The method builds on a novel formulation of
the -dimensional joint intensity distribution by representing the common
anatomy as latent variables and estimating the appearance model with
nonparametric estimators. Through connection to maximum likelihood and the
expectation-maximization algorithm, an information\hyp{}theoretic metric called
-metric and a co-registration algorithm named -CoReg
are induced, allowing groupwise registration of the observed images with
computational complexity of . Moreover, the method naturally
extends for a weakly-supervised scenario where anatomical labels of certain
images are provided. This leads to a combined\hyp{}computing framework
implemented with deep learning, which performs registration and segmentation
simultaneously and collaboratively in an end-to-end fashion. Extensive
experiments were conducted to demonstrate the versatility and applicability of
our model, including multimodal groupwise registration, motion correction for
dynamic contrast enhanced magnetic resonance images, and deep combined
computing for multimodal medical images. Results show the superiority of our
method in various applications in terms of both accuracy and efficiency,
highlighting the advantage of the proposed representation of the imaging
process
Muscle activation mapping of skeletal hand motion: an evolutionary approach.
Creating controlled dynamic character animation consists of mathe- matical modelling of muscles and solving the activation dynamics that form the key to coordination. But biomechanical simulation and control is com- putationally expensive involving complex di erential equations and is not suitable for real-time platforms like games. Performing such computations at every time-step reduces frame rate. Modern games use generic soft- ware packages called physics engines to perform a wide variety of in-game physical e ects. The physics engines are optimized for gaming platforms. Therefore, a physics engine compatible model of anatomical muscles and an alternative control architecture is essential to create biomechanical charac- ters in games. This thesis presents a system that generates muscle activations from captured motion by borrowing principles from biomechanics and neural con- trol. A generic physics engine compliant muscle model primitive is also de- veloped. The muscle model primitive forms the motion actuator and is an integral part of the physical model used in the simulation. This thesis investigates a stochastic solution to create a controller that mimics the neural control system employed in the human body. The control system uses evolutionary neural networks that evolve its weights using genetic algorithms. Examples and guidance often act as templates in muscle training during all stages of human life. Similarly, the neural con- troller attempts to learn muscle coordination through input motion samples. The thesis also explores the objective functions developed that aids in the genetic evolution of the neural network. Character interaction with the game world is still a pre-animated behaviour in most current games. Physically-based procedural hand ani- mation is a step towards autonomous interaction of game characters with the game world. The neural controller and the muscle primitive developed are used to animate a dynamic model of a human hand within a real-time physics engine environment
Disentangling causal webs in the brain using functional Magnetic Resonance Imaging: A review of current approaches
In the past two decades, functional Magnetic Resonance Imaging has been used
to relate neuronal network activity to cognitive processing and behaviour.
Recently this approach has been augmented by algorithms that allow us to infer
causal links between component populations of neuronal networks. Multiple
inference procedures have been proposed to approach this research question but
so far, each method has limitations when it comes to establishing whole-brain
connectivity patterns. In this work, we discuss eight ways to infer causality
in fMRI research: Bayesian Nets, Dynamical Causal Modelling, Granger Causality,
Likelihood Ratios, LiNGAM, Patel's Tau, Structural Equation Modelling, and
Transfer Entropy. We finish with formulating some recommendations for the
future directions in this area
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