Fruit Detection and Tree Segmentation for Yield Mapping in Orchards

Accurate information gathering and processing is critical for precision horticulture, as growers aim to optimise their farm management practices. An accurate inventory of the crop that details its spatial distribution along with health and maturity, can help farmers efficiently target processes such as chemical and fertiliser spraying, crop thinning, harvest management, labour planning and marketing. Growers have traditionally obtained this information by using manual sampling techniques, which tend to be labour intensive, spatially sparse, expensive, inaccurate and prone to subjective biases. Recent advances in sensing and automation for field robotics allow for key measurements to be made for individual plants throughout an orchard in a timely and accurate manner. Farmer operated machines or unmanned robotic platforms can be equipped with a range of sensors to capture a detailed representation over large areas. Robust and accurate data processing techniques are therefore required to extract high level information needed by the grower to support precision farming. This thesis focuses on yield mapping in orchards using image and light detection and ranging (LiDAR) data captured using an unmanned ground vehicle (UGV). The contribution is the framework and algorithmic components for orchard mapping and yield estimation that is applicable to different fruit types and orchard configurations. The framework includes detection of fruits in individual images and tracking them over subsequent frames. The fruit counts are then associated to individual trees, which are segmented from image and LiDAR data, resulting in a structured spatial representation of yield. The first contribution of this thesis is the development of a generic and robust fruit detection algorithm. Images captured in the outdoor environment are susceptible to highly variable external factors that lead to significant appearance variations. Specifically in orchards, variability is caused by changes in illumination, target pose, tree types, etc. The proposed techniques address these issues by using state-of-the-art feature learning approaches for image classification, while investigating the utility of orchard domain knowledge for fruit detection. Detection is performed using both pixel-wise classification of images followed instance segmentation, and bounding-box regression approaches. The experimental results illustrate the versatility of complex deep learning approaches over a multitude of fruit types. The second contribution of this thesis is a tree segmentation approach to detect the individual trees that serve as a standard unit for structured orchard information systems. The work focuses on trellised trees, which present unique challenges for segmentation algorithms due to their intertwined nature. LiDAR data are used to segment the trellis face, and to generate proposals for individual trees trunks. Additional trunk proposals are provided using pixel-wise classification of the image data. The multi-modal observations are fine-tuned by modelling trunk locations using a hidden semi-Markov model (HSMM), within which prior knowledge of tree spacing is incorporated. The final component of this thesis addresses the visual occlusion of fruit within geometrically complex canopies by using a multi-view detection and tracking approach. Single image fruit detections are tracked over a sequence of images, and associated to individual trees or farm rows, with the spatial distribution of the fruit counting forming a yield map over the farm. The results show the advantage of using multi-view imagery (instead of single view analysis) for fruit counting and yield mapping. This thesis includes extensive experimentation in almond, apple and mango orchards, with data captured by a UGV spanning a total of 5 hectares of farm area, over 30 km of vehicle traversal and more than 7,000 trees. The validation of the different processes is performed using manual annotations, which includes fruit and tree locations in image and LiDAR data respectively. Additional evaluation of yield mapping is performed by comparison against fruit counts on trees at the farm and counts made by the growers post-harvest. The framework developed in this thesis is demonstrated to be accurate compared to ground truth at all scales of the pipeline, including fruit detection and tree mapping, leading to accurate yield estimation, per tree and per row, for the different crops. Through the multitude of field experiments conducted over multiple seasons and years, the thesis presents key practical insights necessary for commercial development of an information gathering system in orchards

Tree Structure Retrieval for Apple Trees from 3D Pointcloud

3D reconstruction is a challenging problem and has been an important research topic in the areas of remote sensing and computer vision for many years. Existing 3D reconstruction approaches are not suitable for orchard applications due to complicated tree structures. Current tree reconstruction has included models specific to trees of a certain density, but the impact of varying Leaf Area Index(LAI) on model performance has not been studied. To better manage an apple orchard, this thesis proposes methods for evaluating an apple canopy density mapping system as an input for a variable-rate sprayer for both trellis-structured (2D) and standalone (3D) apple orchards using a 2D LiDAR (Light Detection and Ranging). The canopy density mapping system has been validated for robustness and repeatability with multiple scans. The consistency of the whole row during multiple passes has a correlation R^2 = 0.97. The proposed system will help the decision-making in a variable-rate sprayer. To further study the individual tree structure, this thesis proposes a novel and fast approach to reconstruct and analyse 3D trees over a range of Leaf Area Index (LAI) values from LiDAR for morphology analysis for height, branch length and angles of real and simulated apple trees. After using Principal Component Analysis (PCA) to extract the trunk points, an improved Mean Shift algorithm is introduced as Adapted Mean Shift (AMS) to classify different branch clusters and extract the branch nodes. A full evaluation workflow of tree parameters including trunk and branches is introduced for morphology analysis to investigate the accuracy of the approach over different LAI values. Tree height, branch length, and branch angles were analysed and compared to the ground truth for trees with a range of LAI values. When the LAI is smaller than 0.1, the accuracy for height and length is greater than 90\% and the accuracy for the angles is around 80\%. When the LAI is greater than 0.1, the branch accuracy reduces to 40\%. This analysis of tree reconstruction performance concerning LAI values, as well as the combination of efficient and accurate structure reconstruction, opens the possibility of improving orchard management and botanical studies on a large scale. To improve the accuracy of traditional tree structure analysis, a deep learning approach is introduced to pre-process and classify unbalanced, in-homogeneous, and noisy point cloud data. TreeNet is inspired by 3D U-Net, adding classes and median filters to segment trunk, branch, and leave parts. TreeNet outperformed 3D U-Net and SVM in the case of Kappa, Matthews Correlation Coefficient(MCC), and F1-score value in segmentation. The TreeNet-AMS combined method also showed improvement in tree structure analysis than the traditional AMS method mentioned above. Following on from this research, efficient tree structure analysis on tree height, trunk length, branch position, and branch length could be conducted. Knowing the tree morphology is proved to be closely relevant to thinning, spraying and yield, the proposed work will then largely benefit the relevant studies in agriculture and forestry

Row-sensing Templates: A Generic 3D Sensor-based Approach to Robot Localization with Respect to Orchard Row Centerlines

Accurate robot localization relative to orchard row centerlines is essential for autonomous guidance where satellite signals are often obstructed by foliage. Existing sensor-based approaches rely on various features extracted from images and point clouds. However, any selected features are not available consistently, because the visual and geometrical characteristics of orchard rows change drastically when tree types, growth stages, canopy management practices, seasons, and weather conditions change. In this work, we introduce a novel localization method that doesn't rely on features; instead, it relies on the concept of a row-sensing template, which is the expected observation of a 3D sensor traveling in an orchard row, when the sensor is anywhere on the centerline and perfectly aligned with it. First, the template is built using a few measurements, provided that the sensor's true pose with respect to the centerline is available. Then, during navigation, the best pose estimate (and its confidence) is estimated by maximizing the match between the template and the sensed point cloud using particle-filtering. The method can adapt to various orchards and conditions by re-building the template. Experiments were performed in a vineyard, and in an orchard in different seasons. Results showed that the lateral mean absolute error (MAE) was less than 3.6% of the row width, and the heading MAE was less than 1.72 degrees. Localization was robust, as errors didn't increase when less than 75% of measurement points were missing. The results indicate that template-based localization can provide a generic approach for accurate and robust localization in real-world orchards

Fruit sizing using AI: A review of methods and challenges

Fruit size at harvest is an economically important variable for high-quality table fruit production in orchards and vineyards. In addition, knowing the number and size of the fruit on the tree is essential in the framework of precise production, harvest, and postharvest management. A prerequisite for analysis of fruit in a real-world environment is the detection and segmentation from background signal. In the last five years, deep learning convolutional neural network have become the standard method for automatic fruit detection, achieving F1-scores higher than 90 %, as well as real-time processing speeds. At the same time, different methods have been developed for, mainly, fruit size and, more rarely, fruit maturity estimation from 2D images and 3D point clouds. These sizing methods are focused on a few species like grape, apple, citrus, and mango, resulting in mean absolute error values of less than 4 mm in apple fruit. This review provides an overview of the most recent methodologies developed for in-field fruit detection/counting and sizing as well as few upcoming examples of maturity estimation. Challenges, such as sensor fusion, highly varying lighting conditions, occlusions in the canopy, shortage of public fruit datasets, and opportunities for research transfer, are discussed.This work was partly funded by the Department of Research and Universities of the Generalitat de Catalunya (grants 2017 SGR 646 and 2021 LLAV 00088) and by the Spanish Ministry of Science and Innovation / AEI/10.13039/501100011033 / FEDER (grants RTI2018-094222-B-I00 [PAgFRUIT project] and PID2021-126648OB-I00 [PAgPROTECT project]). The Secretariat of Universities and Research of the Department of Business and Knowledge of the Generalitat de Catalunya and European Social Fund (ESF) are also thanked for financing Juan Carlos Miranda’s pre-doctoral fellowship (2020 FI_B 00586). The work of Jordi Gené-Mola was supported by the Spanish Ministry of Universities through a Margarita Salas postdoctoral grant funded by the European Union - NextGenerationEU.info:eu-repo/semantics/publishedVersio

Proceedings of the European Conference on Agricultural Engineering AgEng2021

This proceedings book results from the AgEng2021 Agricultural Engineering Conference under auspices of the European Society of Agricultural Engineers, held in an online format based on the University of Évora, Portugal, from 4 to 8 July 2021. This book contains the full papers of a selection of abstracts that were the base for the oral presentations and posters presented at the conference. Presentations were distributed in eleven thematic areas: Artificial Intelligence, data processing and management; Automation, robotics and sensor technology; Circular Economy; Education and Rural development; Energy and bioenergy; Integrated and sustainable Farming systems; New application technologies and mechanisation; Post-harvest technologies; Smart farming / Precision agriculture; Soil, land and water engineering; Sustainable production in Farm buildings